K17530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17530

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K17530

Determination of introduced cDNA(s)

  • J023015H11 - Rice Full-length cDNAs - Original: J023015H11

    full reading [+] show sequence

    Nucleotide sequence: J023015H11 - full reading 
    GGACTGGTGA GTACTGATCG TAGTCCAGCC TTGTTCTCCT CTCTCTCTCT 
    CTCTCCTCAC TCCTCGCACA CTTCGGAATT CCCATCATGG CCGGCGGCGC 
    CATGACCGAC ACCGATGGCG CTCACAAGAA CTACCCGGGG AAGATGACCA 
    TCTTCGTCTT CCTCGCCTGC CTCGTCGCCT CCTCCGGCGG CCTCATCTTC 
    GGCTACGACA TCGGCATCTC CGGCGGCGTG ACGTCGATGG ACTCGTTCCT 
    GATCAAGTTC TTCCCGTCGG TGTACGCCAA GGAGAAGGAG ATGGTGGAGA 
    CGAACCAGTA CTGCAAGTTC GACAGCGAGC TGCTCACCCT CTTCACCTCG 
    TCGCTCTACC TCGCCGCGCT CATCGCCTCG CTCTTCGCTT CCGTCATCAC 
    CCGCAAGTTC GGCCGCAGGA TCACCATGCT CGGCGGCGGC GTCATCTTCC 
    TCGTCGGCGC CATCCTCAAC GGAGCCGCCG CCGACGTCGC CATGCTCATC 
    ATCGGCCGCA TCCTCCTCGG CATCGGCGTC GGCTTCAGCA ACCAGGCTGT 
    GCCACTGTAC CTGTCGGAGA TGGCGCCGGC GAGGATGCGG GGCATGCTGA 
    ACATCAGCTT CCAGCTCATG ATCACCGTCG GCATCCTCGC CGCCAACCTC 
    ATCAACTACT TCACCGACAA GATCGCCGGA GGGTGGGGGT GGCGCGTCAG 
    CCTCGGCCTC GCCGCCGTCC CGGCCGTCAT CATGGCCGGC GGCTCCCTCT 
    TCCTCCCCGA CACCCCCAAC TCGCTCCTCT CCCGCGGCAA GGAGAACGAG 
    GCGCGCGCCA TGCTCCGCCG CATCCGTGGC ACCGACGACG TCGGCCCGGA 
    GTACGACGAC CTCGTCGCCG CCAGCGAGGC GTCCAAGGCC ATCGAGAACC 
    CGTGGCGCAC GCTCCTCGAG CGCCGGTACA GGCCGCAGCT GGTGATGTCG 
    GTGCTGATCC CGACGCTGCA GCAGCTCACC GGCATCAACG TCGTCATGTT 
    CTACGCGCCG GTCCTCTTCA AGACCATCGG ATTCGGCGGC ACGGCCTCGC 
    TCATGTCCGC CGTCATCACC GGCCTCGTCA ACATGTTCGC CACCTTCGTC 
    TCCATCGCCA CCGTCGACCG CCTCGGCCGC CGCAAGCTCC TCCTTCAGGG 
    CGGCGTCCAA ATGATCTTTG CGCAGTTCAT TCTTGGGACG CTGATCGCCG 
    TCAAGTTCGG GACGGCGGGC GTGGCGAACA TCTCGCGGGG TTACGCCATC 
    GTGGTGGTGC TGTGCATCTG CGTGTTCGTG TCGGCGTTCG CGTGGTCGTG 
    GGGACCCCTC GGGTGGCTGG TTCCCAGCGA GATCTTCCCG CTGGAGATCA 
    GGTCGGCGGC GCAGAGCGTG GTGGTGGTGT TCAACATGGC CTTCACCTTC 
    ATCATCGCGC AGATCTTCCT GATGATGCTG TGCCACCTCA AGTTCGGCCT 
    CTTCTACTTC TTCGGCGCCA TGGAGCTCAT CATGACGGGG TTCGTCTTCT 
    TCTTCCTGCC GGAGACGAAG GGGATTCCCA TCGAGGAGAT GGACAGGATC 
    TGGGGTAAGC ACTGGTACTG GAGACGGTTC GTCGGCGCTG GGGCCGGCGG 
    CAAGGTCGAG ATTACCTCCA CAGTATGACA TTCGTGCCGT AAACGTTTAT 
    CTTTCAATTT GTTTTCGGAT TACGTAATTG AATCTGCTGG CTACATCGAT 
    CC

    Gene models with high sequence identity

    1. AT1G11260.1 [+] show detail - sugar transporter 1
      E-value: 3e-169; Score: 592.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 9.7e-225
    HMMPanther SUGAR TRANSPORTER 9.7e-225
    ProfileScan MFS 50.468
    HMMTigr Sugar/inositol transporter 1.3e-131
    superfamily Major facilitator superfamily, general substrate transporter 2.2e-61
    HMMPfam General substrate transporter 7e-132
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    FPrintScan Sugar/inositol transporter 2.4e-32
    FPrintScan Sugar/inositol transporter 2.4e-32
    FPrintScan Sugar/inositol transporter 2.4e-32
    FPrintScan Sugar/inositol transporter 2.4e-32
    FPrintScan Sugar/inositol transporter 2.4e-32

    See the detailed result >

    AT1G11260.1

    Model type
    Protein coding
    Short Description
    sugar transporter 1
    Curator Summary
    Encodes a H+/hexose cotransporter.
    Computational Description
    sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR