K17540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17540

Determination of introduced cDNA(s)

J013111L08 - Rice Full-length cDNAs - Original: J013111L08

full reading [+] show sequence

GGTCCAAACA CTGAGCTGGT AGTGGACACA GAGAGTTCTG CACTCTCTTT 
CACTGAGGAG AGCAGAACAG AACAAGAGGA GGAGAACAAA AAAAAAAAAG 
AGAAAAATCC TATGGCCTCT TGTGCATCAC CAAGGCTCAA ATCCCTGTGC 
CACCATCCAC TCTTCATCAT CTTGCTTGCT CTCTCATTGC TGCAGACAAT 
CACAGCAGAG GATGAGCAGG AGGCTGATAG GGTTGCCTTC CTCCCTGGGC 
AGCCAAGGAG CCCACAGATG TCTCAGTTCT CAGGCTACAT CACTGTGAAC 
AGCCAGAATG GCAGGGCACT CTTCTACTGG TTCTTTGAGG CTCAGGCACT 
GCCTTCCAAG AAGCCTCTCC TGCTCTGGCT TAATGGAGGT CCTGGTTGCT 
CATCTGTGGG CTATGGAGCA GCTTCTGAAT TGGGTCCTCT CATGGTCAAT 
GGAAATGGAA CAGGTTTGGA ATTCAACAAG TTTGCATGGA ATAACGAGGC 
CAATTTGTTG TTCTTGGAAT CTCCTGTTGG AGTCGGCTTC TCCTACACAA 
ATACCTCGTC TGACCTAGAG AGCATCGATG ACCGTTTTGT CGCTGAGGAC 
ACCTACAATT TCTTGGTGAA TTGGTTCAAG AGGTTTCCTC AGTACAAAAA 
CCATGACTTC TACATCTCTG GAGAGAGCTA TGCAGGGCAC TATGTTCCTC 
AGCTTGCTGA TGTAGTGTAT GAGCGCAACA AGCATGTTGA AACAAACCAG 
CATATCAATT TGAAAGGATT TATTGTTGGC AATGCAGAGA CTGATGATTA 
CTATGACTAC AAGGGACTAG TTGAGTTCGC TTGGAGTCAC TCAGTGATCT 
CAGATCAACT CTATAAGCAT GTCAACAATG TTTGCGACTT CAGGTTATCA 
CCCCGTAGCA ATGAGTGTAA CCATGTAATG GGATACATAT ATGATCAGTA 
CGATATGATC GATATTTTCA ATGTGTATGC ACCTAAGTGC AACACTGATG 
ACTCATCCCT CTTTTCCACC TCCTACAGTA CAGCTGATAT GAATGCTAAG 
AAGAGGCTTA AAGGCACGAG GATGTACTCA GGGTATGATC CGTGCTATTC 
GTCACATATC GAAGATTACA TGAACAAGAT GGATGTGCAG AAATCACTTC 
ATGCGAATAC GAGTGGATTG ATCAAGGACA GAAAATGGAG TATCTGCAGT 
TATTCAATAT TCGACAATTA CGACATCACG GTCTTCTCTG TTCTTCCTAT 
TTACTCTAAG CTTATCAAGG CTGGCCTACG AATATGGGTC TACAGTGGAG 
ACGTGGATGG CAGGGTTCCA GTTATTGGAT CCCGGTACTG CGTAGAAGCC 
CTTGGCCTTC CTGTTAAGTC ACAGTGGCAA CCATGGTACC TAAACAATCA 
GGTTGCTGGG AGATTTGTTG AGTATCAAGG ATTGACAATG GCCACAGTAA 
GAGGAGCTGG ACATGCAGTG CCACAAGACA AGCCAGAACA GGCACTGGTG 
GTAATCAATT CCTTTCTTTC AGGCAGGCGA CTACCAACAA AAAACAACCG 
ATGATACAAC CCAGATAAAA CTTACACATA AAAATAAAGA AGGAATAAGT 
CATCGATATT ATCATACATA GATGAAACAA TACATGTATT GTAGGCTCTT 
CATGTATGCA ATTGTCTGTG TCAACTAGAT GCCACCCTAT ACATTAATCT 
GTATATTTTC CTTATGTTTG AGTTTTATGT TGAGAATGAT AATTTCAACC 
CTATATTTTC

Gene models with high sequence identity

AT3G17180.1 [+] show detail - serine carboxypeptidase-like 33
E-value: 2e-157; Score: 552.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
Coil	coiled-coil	0
Gene3D	no description	6e-139
HMMPanther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE	2.2e-240
HMMPanther	Peptidase S10, serine carboxypeptidase	2.2e-240
superfamily	alpha/beta-Hydrolases	1.5e-138
FPrintScan	Peptidase S10, serine carboxypeptidase	1e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	1e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	1e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	1e-27
HMMPfam	Peptidase S10, serine carboxypeptidase	8.5e-135

See the detailed result >

AT3G17180.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 33
Computational Description: serine carboxypeptidase-like 33 (scpl33); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 34 (TAIR:AT5G23210.1); Has 3699 Blast hits to 3642 proteins in 416 species: Archae - 0; Bacteria - 288; Metazoa - 630; Fungi - 869; Plants - 1485; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Link: InterPro Scan - TAIR