K17543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17543

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17543

Determination of introduced cDNA(s)

  • J033115I05 - Rice Full-length cDNAs - Original: J033115I05

    full reading [+] show sequence

    Nucleotide sequence: J033115I05 - full reading
    GAGCGTGATC CGACCCAAAT CTAATCTAAA CCCGTCCCCG TGGATTACGC 
    ATCATTACCC CGCATCTGCT CGTGGATTTT ATTAGCTTCT CCTCTCGCTA
    CGTTTGGGGT TTGGTTTTTG ATGGGCTAAT TATTAGCGGT GGTGGAACCT
    GAAAAGTCGC GTGTTTTGTG CTTTGCGTTT TGCTCGCTTG CCGTGTGTAG
    CGGTGGACTG GTGGCGTCGT TCGTGTCGCG CACCTTTTCT CTTTTTTTTT
    CTTCACCGGG ACCAACTGGG GAAGAAAGAT TTGGGGGGTT TTTGGCCGTT
    TCGGCGTCTC ATCTTTCTTC TCGCCGCGCG CGCTCGTGTC CAGTCGCCGC
    CGTAGTTGTA CGAGCGCTAT CCTTGAGCTT TGGCTGCACG GGATTCATTG
    CAAGGGATGC GGTGGCCAGC GTCGTAACTT GCTCGTTTCA GATCGTGACG
    CTGTGGGGTT CTCTTTTTCA GTTACTGCTG CTACTGCCGG TACCGGCTGC
    CGAGGAGGGG AATGAGGATG AAGACGCTGG CGTGCTGCCG GCGGCGGCCG
    CAGGACTTCA GCATCGACAT GGACCAGGAG CCTGACAGGG TGATGACGTA
    CAATGGCCTT GAGAGCTGTA TTATCAACAG TTCCTCTTAT GACGATGATA
    GTGGCCTTAG TGCAACAACG GGAGCAGATG GGTGTGTAAC CACTGATTCC
    GTTGATGATG AAGTCTCAAG TTGCTCCTCA AGTAAAGATG TTTCTAGCTC
    TTCGTTCTCT TCACAATGCC ATCCACTGAG AAAGCAAGAG GAGCATTCAC
    TTTACGAGTT GGATACACTC AGTGCTGTCC ATCTACTTCC TCTCAAAGGG
    AAGAAGCCAA TCACGTATAC CTTGAGTGCT TCAGACATTG AAACCATGAA
    GGAGAAGTTT GGGAAGCTAC TGCTTGGTGA TGATGCTTCA GGAGGAGCTA
    GAGGTGTTTG TGCTGCTCTG GCTTTGTCCA ATGCCATTAT TAATCTCTCA
    GCCACTATAT TTGGAGAACT CTGGAAGCTG GAACCACTCT GTGAAGAGAA
    AAAAGTCAGG TGGCGGAAGG AAATGGACTG GTTGCTTTCT CCTACAACCT
    ACATGGTTGA GCTGGTTCCT ACAAAACAAA ATGGAGCAGA CGGGTGCACG
    TTTGAGATTA TGACCCCGAA AGCACGTTCA GATGTTAATG TGAACCTTCC
    TGCCCTTCAG AAGCTTGATT CCATGCTAAT TGAAGTGCTG GACTCGATGG
    TAGACACAGA GTATTGGTAT GTGGAGAGTG GTAGCCGAGC TAATGGCCGG
    GGCAAAAAGA ATGGTCTGAG GCAGACGAAG AAGTGGTGGC TCCCATCACC
    TCGTGTGCCA GATATAGGGT TGTCTCAATT TCAGAGAAAT AGGCTTGTTT
    TTCAGGCTAA GCTGGTTCAT CAAATCCTCA AAGCTGCGAT GTCAATCAAT
    GAAGAAGTCC TGCTTCAGAT ACCTATTCCT CCAGCTGTCA CGGATGCTCT
    TCCTAAGTCT GGCAGAGCTG GCTTGGGTGA AGACTTGTAC CATGCTATAA
    CCACAGAGTA CATTCCCATA GAGGAAATTT TCCTCTCTCT TAGTTTAAAA
    ACGGAGCATA CCGTGCTCGA GACTATGAAC CGGTTGGAGG GTGCAGTTTT
    TGCATGGAAT CAAAGGATCT CAGAGGAAAA GAGCAAGAAA TCCCCAGGAA
    GGCATTCCTG GAATTTCATG AAGGATAGTT CATCAGAACT CGATAAGATG
    TCCATGTGCA TAGAAAGGGT TGAAACACTT ATGCAGCTTC TGAAATCCAG
    ATTCCCGAGC CTTCCTCCAA CTTTTATAGA AGTTGTAAAG ATCCAATACA
    ATGTGGACGT GGGGCATGCC ATTGTGGAGG CCTACTCAAG GGTTCTTGTT
    GGGGTGGCAT TCAGCATACT GTCCAGGGTA GCAGAGATTC TGCTGGAAGA
    TGACCTGATC AAGAAGCCCA ACACCCCTCT GGCCACACTC AAGTTCGACC
    TCTCCTCCGA CGTGTACCTC GCCGGCATCA CCGAGACGCC GCCGGGCCAC
    ATCCGGCGGT CGCTGATGGA CCAGATCAGC CTGGTCGACG GCAGCCTCGA
    CGCGGTCGTC AGGAAGAAGG GGGTGAAGCA GCTTAGGTGG TGAAAAAGGA
    CATGAAGCTG TGAAGTTTTT CTTTTTGGCA GTTGTACAGG GTTTGTGATG
    ATGATGCATG CTGTGCTGCG CGCTGGCTGG CTACATAAAG TTGGTTAAGT
    TCACCTTGCT AATACGTCCT GTATGGAACG GGCTAAATAG TGTATGCATG
    GTAAAAGCTA CTAGC

    Gene models with high sequence identity

    1. AT1G31650.1 [+] show detail - RHO guanyl-nucleotide exchange factor 14
      E-value: 5e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rop nucleotide exchanger, PRONE 3.7e-138
    ProfileScan Rop nucleotide exchanger, PRONE 98.521

    See the detailed result >

    AT1G31650.1

    Model type
    Protein coding
    Short Description
    RHO guanyl-nucleotide exchange factor 14
    Curator Summary
    Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
    Computational Description
    RHO guanyl-nucleotide exchange factor 14 (ROPGEF14); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 302 Blast hits to 301 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR