K17549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17549

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17549

Determination of introduced cDNA(s)

  • J013097A06 - Rice Full-length cDNAs - Original: J013097A06

    full reading [+] show sequence

    Nucleotide sequence: J013097A06 - full reading 
    GGCTCTTTCC GCCGCCCTCT CTGCTGCCTC TGCCCGGCGA GGGGCGGCGC 
    GATGAAGCGC ACGATGGACG CGCGGTGGGC GCACATCGTG TACGCGTTGT 
    TGGTGCCGGA GGCGTTCTTC CGCGACCCCG ACGGCCGCGA CGGCGTCGCC 
    TCTCGCTCTC TCCGCCGCCC TCTCGCTATC TCCGCGGCCA CGCTGCTTTC 
    TCTGCCCGGC GAGGGGCGGC GCTATGAAGC ACACGACGAA CGCGCGGTGG 
    GCGCACATCG TGTGCGCGCT GCTGGTGCCA GAGGTGTTCT TCCGCGACCC 
    CGACGACCAC GACGGCGTCG ACTGCTTGAG CTATCTCGCT CTCTTCGCTG 
    CCCTCTGGCT CTCTCCGCCA GCGTCACCGC CACGTCATCT TCACCGTTGT 
    CGCCACCTCC CTCTATTCCG CCGGCTCTCC CTATTTCACC TCCGTTGCTG 
    TCTCCTCTGG TGTCACCGTC GCCGCCGCCG CCGCTTGCCT CATGTAGGTA 
    GGTGCCGTCG CCTCACGATC CTTCACCAGT CGTCGCCACG ACGAGATCGT 
    TCCTCCCTCC TATTCAGCCG CCACATCTCC CAGCGAGGAG CTCGGGACCA 
    CCAGGTCCGG CGACCCCGTC CTCCTTACAG GCGGATCCAG AAACCCGGAT 
    GAGGATGACA GCCGTTACCA CCCTTTTCTC CTCTTTCATC TTCACATGTT 
    AGAGGATCCC TCTCCATCTT CCTCAGCTCG CTGGCATGGG AGTCGCACAT 
    GATAAGGGGT TTCACGGGAG CCGGCAGCGA CCACTGCTTC TGTGAGAGGA 
    CCGAAGGTGA GGTTGGGGCT TTCTCCCCCT CCTATTGTGC ATGCATATTG 
    ATGCGATTGG ACCCATTGTT TGGCCATATC TTCCTTTACT CACACATTCT 
    GCTTTCGTCG GTATCCAATT CCATCTCTTG ATAATTATGG TGTTGTGCTA 
    TGTTTGATAT TCTAATTTGT ATGTTGCACA TATAATTTTA ATTGCAGATA 
    CCACCGCTC

    Gene models with high sequence identity

    1. AT3G14740.2 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 0.000000000009; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MIXED-LINEAGE LEUKEMIA PROTEIN 0.0000000013
    HMMPanther PHD FINGER PROTEINS 0.0000000013
    HMMPanther MIXED-LINEAGE LEUKEMIA PROTEIN 0.00000000000058
    HMMPanther PHD FINGER PROTEINS 0.00000000000058

    See the detailed result >

    AT3G14740.2

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR