K17609

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17609

Determination of introduced cDNA(s)

J033136J12 - Rice Full-length cDNAs - Original: J033136J12

full reading [+] show sequence

GGTTGGAGTG AGTATTCATC GAGGCAAAGC TCGAATTTTT GGTACTATCC 
GATTGGTGGC GAAGCAGCGG CGGAGCGAGA GAAAATCGCT GTAGGAATCG 
GGGGAGAAGG AGGAGTAGAT AGAGGGAGGT GGATTGAGCT GTGGGAGGTT 
AGGTTGGTGA TTGGTAGAGG AGGAGGAGGA GGAGATGGAG AGGAAGGTGG 
TGGTGGTGTG CGCGGTGGTC GGCTTCCTCG GCGTCCTCTC GGCGGCGCTC 
GGCTTCGCGG CGGAGGGCAC ACGCGTCAAG GTTTCAGATG TGCAAACTTC 
TTCTCCAGGT CAATGCATAT ACCCAAGAAG CCCAGCCTTA GCCCTAGGGT 
TAATATCTGC GGTTGCTCTT ATGGTCGCCC AGTCTATTAT AAATACAGTG 
GCTGGTTGCA TCTGTTGTAA GAGGCATCCA GTTCCCTCAG ACACTAACTG 
GAGCGTAGCT CTGATCTCAT TCATCGTGTC TTGGGCCACT TTCATAATCG 
CGTTCCTTCT CCTACTGACC GGAGCTGCAC TTAACGATCA ACGGGGTGAG 
GAGAACATGT ACTTTGGCAG CTTCTGCTAC GTTGTCGAGC CAGGGGTCTT 
TTCTGGAGGG GCAGTGCTCT CACTTGCCAG CGTGGCACTG GCAATAGTTT 
ACTACGTTGC CCTATCATCG GCGAAAAGTC CACCAAATTG GGGTCCCCAG 
CAGAACCAAG GCATCGCCAT GGGCCAACCT GTGATCCCTC CACAGAGCAG 
CGAACCGGTG TTTGTCCACG AGGACACCTA CAATCGGCAG CAATTCCCAT 
AAATCATGAT CTGTGCAAGC TGTTTCGAGG GCCATTCTGA TACATTATGT 
TTGGTTTGTA TAGGCCTCCA GGTTAGAACA GTAGCAGTAA CAATTGTTGT 
TAGGTAGAGT CATGTTTTTT GCTTTCTTCT TCCCCCTCTT TCTTGAGCGC 
TACTGTCGCA CGTTCTGCTT CATCACAGCG GATATTCGAT TTTACATGAA 
CCGGGCAATG TTGAAGAAAG CTTGAGTTTC TTGCT

Gene models with high sequence identity

AT5G17210.1 [+] show detail - Protein of unknown function (DUF1218)
E-value: 3e-47; Score: 186.00

InterPro Scan Digest

See the detailed result >

AT5G17210.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1218)
Computational Description: Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR