K17646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17646

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
T2 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Original: K17646

Determination of introduced cDNA(s)

  • J023061K06 - Rice Full-length cDNAs - Original: J023061K06

    full reading [+] show sequence

    Nucleotide sequence: J023061K06 - full reading
    GAATCTCTCT TCTCCCTCTC GGCGCACACC CAGATTCCCG CCGACTCCGG 
    CGCCCCTCTC GCCGCCGCCT GCCCCCTTCC TTCATTCTCT CCTCCTCCTA
    CGTAAATAAT AATCCACCTA AGACCAACCG ATTATGAGCT CTCTATGCCC
    GTTTGCCAAA CTCGCCTCTG CTGGCGCCAC ATGCCCCGTA AAATCAGACA
    ACAAAACCAC CTCATGTCCT GTCACAGCCA ACAATCACAC CGACGACGAC
    GATAATGAAA AAACTGGCAA TGCTAACACC GATCCTCGTG TGGTGCCAGC
    AAAGTGCCCC TTTGGCTATG ACTCCAACAA CACCTTCAAG CTTGGCCCAC
    TCAGCTGCGT GGTCTGCCAC GCTCTGCTAC ATCAAAGCAG CAAATGCACC
    CCGTGCTCGC ACAAGTTCTG CAAGGCATGC ATATTGCGCT TTAAGGACTG
    TCCATTGTGT GGTGCTGACA TCCAAGGGAT CGAGCCTGAT GATGAGCTTC
    AAGGCCTTGT CGACCGCTTC ATTGATGGCC ATGCCCGAAT CAAGAGATCA
    CATGCTGCAG GCGATGGTGA AGCCGCAAGT GACAAGACCA AGGTCATTTA
    CGAGCATGTC TCCATGGAGA GAGGAGCTTT TCTGGTCCAG CAAGCGATGA
    GGGCTTTTCG CGCACAGAAC ATTGAAAGTG CAAAGTCAAG GCTCAGTATG
    TGTGCAGAAG ACATCAGGGA AGAGTTGAAA TCTAAAGAAG ACAACCAAGA
    ACTGTGTTCT CAACTTGGAG CTGTGTTAGG AATGCTTGGG GACTGCTGTC
    GGACCTTGGG AGATGCTCCT TCAGCAATCA CTTACTATGA AGAAAGTGCT
    GAATTCCTCT CGAAATTGCC CAAAAAGGAT CTGGAGTTGG TCCATACTCT
    CTCAGTTTCA CTAAATAAAA TTGGAGATCT TTGCTATTAT GATGGGGACC
    TCCACTCAGC AAGAAGCTAT TATGCGCGTT CGTTGGACGT TCGCAGAAGT
    GCAGTAAAAG AACACTCAGC TGTGGCTTCC CAGGTCATTG ATGTAGCAAC
    TTCTCTTGCC AAAGTTGCGG ATGTCGATAG AAATCTTGGG AACGAAAGCA
    TGGCAGTTGA GGGTTTTGAG GAAGCAATTA AATGCCTTGA GAATTTGAAG
    CTGGAATCTG GAGAGGCCAG TCTTGAGCAG CGGCGTCTCT CGGTTCTCGA
    CTTTCTACAA AAACAACTGG ATGACAAGTG ATATGCACGG TTCTTTGAAG
    AGCACACTCA CAGGATATAT GTACTATCCA TAACGAGGAT CAGCTCCAGT
    AGTCTCTGTG ATGCATATGG AAGGGAGTTG CTCCAGAATG AATGGTAACT
    GGTGTGTATT TGAGGTTTGC TGCGACACAG AATAAATACT TTCAAGTTGT
    ATATGTTTCT TGTGTCTGCC ACGGGCGGAG ACCTCTTTGA GTCAAGATGG
    CCACCTCTTA AGCCCTGAGG CACCACGGAG ACGAAACTTC TCGGAAGTAC
    TGGTTCCTTG TTGCCTCTGC CGTGTTATGT GAATGTTATC CCACTGTATA
    TTTATTGATG ATATAATATA AGAAAAGAAC AGCACAGATG TTTTGTATCG
    CCCTATC

    Gene models with high sequence identity

    1. AT3G54360.1 [+] show detail - zinc ion binding
      E-value: 4e-122; Score: 435.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMSmart Zinc finger, RING-type 0.0007
    superfamily TPR-like 0.00000000029
    superfamily RING/U-box 0.0000000019
    Gene3D no description 0.000073
    ProfileScan Zinc finger, RING-type 11.471

    See the detailed result >

    AT3G54360.1

    Model type
    Protein coding
    Short Description
    zinc ion binding
    Computational Description
    zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR