K17721

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17721

Determination of introduced cDNA(s)

J023106J08 - Rice Full-length cDNAs - Original: J023106J08

full reading [+] show sequence

GACCACCGCC TCCGCCGACC CCGATCCCCA TCCATCCCGC CAGCGACCGA 
GCAGGGTCGC CGTCGTTCGC CGTCGTCCTG CTGCTTCCGC CGCATCCATC 
CCGGTGAGCA GTCACATCCT CCGCCACCGC CGCCTGCGCC GATCCCCATC 
CATCCCTCCA GCGAGCAGGG CGGGCGCCGT CGTTCCTCCT GCTGCTTCCG 
CCCGCATCCA TCCTGGTCAC TGTGAAAATG GAAGGAAATG CTAGAGGCGG 
TGGGCATTCT GAGGCACTGA AGAACTACAA TCTAGGAAGA ACTTTAGGTA 
TTGGTTCATT TGGAAAAGTG AAGATTGCAG AGCATAAGCT TACAGGGCAC 
AGAGTTGCTA TAAAGATCCT GAACCGTCGC CAAATGAGAA ATATGGAAAT 
GGAGGAGAAA GCAAAGAGAG AAATCAAGAT ATTGAGGTTG TTCATTCATC 
CCCATATCAT TCGCCTTTAT GAGGTCATAT ACACTCCTAC GGATATATAT 
GTTGTGATGG AGTACTGCAA GTTTGGAGAA CTGTTTGATT ACATTGTTGA 
GAAAGGCAGG TTGCAGGAAG ATGAGGCTCG CCGAATCTTC CAGCAGATTA 
TATCTGGGGT TGAATACTGC CACAGAAACA TGGTGGTTCA TCGTGATCTG 
AAGCCAGAAA ACTTGCTACT GGATTCAAAG TATAACGTAA AGCTTGCTGA 
CTTTGGTTTG AGTAATGTCA TGCATGATGG CCATTTTTTA AAGACAAGCT 
GCGGGAGTCC GAATTATGCT GCTCCAGAGG TGATCTCTGG TAAATTATAT 
GCTGGACCCG AGGTTGATGT ATGGAGCTGT GGAGTGATCC TTTATGCTCT 
CCTTTGTGGT ACTCTTCCAT TTGATGACGA GAATATCCCC AACCTATTCA 
AAAAGATAAA GGGTGGTATA TATACTCTCC CAAGTCATTT ATCTGCTCTG 
GCCAGGGATT TGATCCCAAG GATGCTTGTT GTTGATCCAA TGAAGAGAAT 
CACAATTCGT GAAATTCGAG AGCATCAATG GTTTCAGATT CGCCTTCCTC 
GTTACTTAGC AGTGCCTCCA CCAGACACAG CACAGCAAGC CAAAATGATT 
GATGAAGATA CCCTTCAAGA CGTTGTAAAC TTGGGTTATG AAAAGGACCA 
TGTGTGTGAA TCTCTGCGCA ATAGACTGCA AAATGAGGCA ACTGTTGCAT 
ATTATTTGCT ATTGGACAAT CGATTCCGAG CTACCAGTGG CTATCTGGGA 
GCAGACTATC AAGAATCATT GGAGAGGAAT CTTAATCGCT TTGCTTCATC 
AGAATCAGCA AGTTCAAATA CAAGGCATTA TCTCCCAGGA AGCAGTGATC 
CTCATGCCAG TGGTTTGCGC CCACATTATC CTGTTGAAAG AAAATGGGCT 
CTTGGACTTC AGTCTCGAGC TCAGCCTCGC GAGATAATGA TTGAGGTCCT 
AAAGGCACTT GAAGACTTAA ATGTCTGCTG GAAGAAGAAT GGACAGTACA 
ACATGAAGTG CAGATGGAGC GTTGGGTATC CTCAGGCCAC TGATATGTTA 
GATGTCAACC ACAGCTTTGT TGATGACTCA ATTATAATGG ATAATGGCGA 
TGTAAACGGG AGGTTACCTG CTGTGATCAA GTTTGAAATC CAGCTTTACA 
AGAGCAGAGA CGAGAAGTAT CTGCTGGATA TGCAGAGAGT TACGGGGCCT 
CAGCTCCTTT TCCTGGACTT CTGTGCAGCC TTCCTTACCA AACTGAGGGT 
TCTATAGTAC CCCGTGTTGG CTTCAGTGAA TAACCAAACC TAGGGTTTTA 
TCATGTGCGG TTTTTCACTG CAATAATGAA TAAAGGACAC CATGTAAATA 
GGCAGCTGTG ACTTTCTTCC CGGCCCTTAG ATAGAGAAGG TTGTTGTTTG 
AGTGACTAGT GTTATGTTGA GCACCAAAAT GTTGGTTGTT ACAGGCTTAC 
ATAGTATATA GATCTTGATA AGCTATCTGG GTGGGCGAAT GCTTGATATC 
TAATTTTTTG CAGGCTGCAG CTATACTGCT GGTGATGCTG CAGTACAAGC 
TTTTCTTTTT GCTCCTGCAC ACGGTTATTA TGCGTGTGCA TGGAAATTTT 
GCTACTGCTA GAAAGAAGCT AGGTAAGAAT ATCAGCCCCT TGCTGCCGGG 
TTGTGGTATA AATGTAGATG ACAGCAAATT TAGTGAAATA TCAACAAATG 
TAGTCGTATG ATC

Gene models with high sequence identity

AT3G01090.2 [+] show detail - SNF1 kinase homolog 10
E-value: 0; Score: 769.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Protein kinase, catalytic domain	54.704
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	12.547
ProfileScan	Kinase-associated KA1	15.269
Gene3D	no description	1.3e-70
HMMPanther	Protein kinase, Snf1-like AMPK	9.7e-256
HMMPanther	Calcium/calmodulin-dependent protein kinase-like	9.7e-256
HMMPfam	Serine/threonine-protein kinase-like domain	3.8e-80
HMMPfam	Kinase-associated KA1	7.5e-18
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
superfamily	Protein kinase-like domain	1.6e-97
superfamily	Kinase associated domain 1, KA1	3.2e-06
HMMSmart	Serine/threonine-protein kinase domain	2e-110
HMMSmart	Tyrosine-protein kinase, catalytic domain	1e-14

See the detailed result >

AT3G01090.2

Model type: Protein coding
Short Description: SNF1 kinase homolog 10
Curator Summary: encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase
Computational Description: SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 133590 Blast hits to 131265 proteins in 4759 species: Archae - 166; Bacteria - 15153; Metazoa - 49555; Fungi - 13420; Plants - 32561; Viruses - 542; Other Eukaryotes - 22193 (source: NCBI BLink).
Link: InterPro Scan - TAIR