K17729

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17729

Determination of introduced cDNA(s)

  • J033022F16 - Rice Full-length cDNAs - Original: J033022F16

    full reading [+] show sequence

    Nucleotide sequence: J033022F16 - full reading 
    GACCTCCTCT CCCCGAACCC CCAACCCTCC AGAACCTTCC GCCTCCCGCC 
    GGCGCCGGCG CCGCCGACTC GGCCGCGGAA ACCCTAGCGT GCGCTCGCGC 
    CCGCCCTCGC TCGCCGGCCA CCTCCGGACT CCGCCTCCTC CGCCTGCTCC 
    TCGTCTCCGG CCCCTCCGCC GCCGTCGACC GGTCAGATCT CGACGCCGTC 
    AAGCCGCGAT GGAGGACTGG GATTCTGAAG ACTTTCAGCC CGCAGTGCCT 
    AGTGCAAAAG CTGAGCCGCT TAAAAGTAAG TGGGCAGATG AAGATGTGGA 
    AGAAGATGAT GTAAAAGAAT CATGGGAAGA AGAGGAGGAG GAGAAACCTA 
    AACCACCACC TGTAGAAAAG ACTGCACCAA AACCTAGTGG GAAAGGTGCT 
    GCGAAGAAAG GAAAACAACA AGCATCAACT AGTTCTGAAG TAGTTCAAGA 
    TGAGGCTCTG GATGATCCTG CTCTAGAGAA ACTTCGTCAA CAAAGGCTTG 
    TGGAAGAAGC TGACTTTAAG TCAACTACGG AACTTTTTGG AAAGAAGGAC 
    GGCAGTGAAA AGTCCCTAGA TACCTTCATC CCAAAGTCTG AGAGTGACTT 
    TGCGGAATAT GCAGAGCTTA TTGCAAACAA ACTGCGTCCC TATGAGAAAA 
    GCTTCCACTA TATGGGTCTA CTCAAGAATG TCATGAGACT TTCCATGGCA 
    TCATTGAAAG GTGCGGATGC GAAAGATATA TCGTCCTCCA TTGCAGCAAT 
    TGCTAATGAA AAGATCAAGG CTGAGAAAGA AGCTGCAGCA GGCAAAAAGA 
    AACAAGGGGC AAAAAAGAAG CAGCTACACA TTGAGAATAA AGACGATGAT 
    TTCATCCCTG GAAAGGGTAA TTTTGATGAT CCGGATGAGT ACGATTTCAT 
    GTGATCGGCT GTGAGGGAAC CGTCATCTTC TATGTATACC TTGGCAAGCA 
    GAGATTAGAG TTTGCGGCAT AGTTGGTATT TTCATTCAGA GGCACCTGAA 
    CACTTGAAAC GATTGCATGG GAACAATGCC CATTTGTTCG ACGTTGATTT 
    TGACTCTCAC AGAATAGGGA AGAGCACCTG TGTGCTCGAG CTCGACACAT 
    AGGCGTTTTT TCTTATTCTT AATCCACATT GTGTTTTTGG TCTGTTCATG 
    GGTTGGGATC TATATTTTTT TGCCAACTGT AGTATAATGT GTATCTGGTT 
    TATATTGGAG TCCTGC

    Gene models with high sequence identity

    1. AT1G66070.2 [+] show detail - Translation initiation factor eIF3 subunit
      E-value: 3e-26; Score: 116.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translation initiation factor eIF3 subunit 1.6e-34
    HMMPfam Translation initiation factor eIF3 subunit 3.2e-58
    Coil coiled-coil 0

    See the detailed result >

    AT1G66070.2

    Model type
    Protein coding
    Short Description
    Translation initiation factor eIF3 subunit
    Computational Description
    Translation initiation factor eIF3 subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: Translation initiation factor eIF3 subunit (TAIR:AT5G37475.1).
    Link
    InterPro Scan - TAIR