K17735

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17735

Determination of introduced cDNA(s)

  • J033050J23 - Rice Full-length cDNAs - Original: J033050J23

    full reading [+] show sequence

    Nucleotide sequence: J033050J23 - full reading 
    GGCCACTAGC CGAGCCCCAT CGATCGTATT CGCGTCAAGC TTCTTCTCTT 
    CCTCTCCAAA TTTCCAACCT CTCCATCCAT CCATCCCGCA TCCGATTCTT 
    CCAACCAATC TCATCTTCTT CCTCCTCCTC GGCGGCTCGC CGATTCCCCG 
    ACGGCGATGA AGATCACGGC GCTGCTGGTG CTCAAATCCC CCGGCGACGG 
    CGACTCGTCG TCGGGTGGCG GTGGCGGCGA GCAGGAGCAG GAGCAGCAGG 
    CGGCGGTGGT GGTGGCGAAC GCGACCGACG TGAGCCACTT CGGCTACTTC 
    CAGCGCAACC CCGCCCGCGA GTTCATCCTC TTCGTCGCCC GCACCGTCGC 
    CGCCCGCACC CCCGCCGGCC GCCGCCAGTC TGTCCAGCAC GAAGAGTACA 
    AGGTGCATTG CTACAACCAG AATGGCCTCT GCGCCATCGC CTTCACCGAC 
    GACCACTACC CCGTCAGGAG CGCCTTCTCC CTCCTCAACA CGGTGCTGGA 
    AGAGTACCAC AAGACTTTTG GGGAGAGATG GAGGACAGCA AAAGCTGATA 
    ACACCCAGCC TTGGCAATAC CTGGATGATG CCTTGACAAA ATACCAGGAT 
    CCTGCAGAGG CTGACAAGTT GCTGAAAATT CAGAGGGATT TGGATGAAAC 
    TAAGATTATT CTTCACAAGA CCATCGATAG TGTACTTTCT AGAGGTGAAA 
    GATTGGATAG CCTAGTGGAG AAGAGTTCAG ATCTAAGTGC TGCTTCACAG 
    ATGTTCTACA AGCAGGCCAA GAAAACCAAC TCTTGTTGTA CAATCCTGTA 
    ATAGAAACTC TGGTATAGAG TTCTGCAGTA GCACACTATG TTGGCATTTT 
    CTTTGCTGCA AGTCTGCGAT TAATGTCATA GCATCCTGGT GTCCGAGGTG 
    TTAAACAAAG TTAGCGGTTA ACATATGCCA CAGGGCTACC CTACGTAATT 
    TTTTGTAAGT AACACAAGTG TGGTTGCCAT TGAGATGATC TGTGCCTGGT 
    ACTGTGTCAA AGCTATAATT AGTGATGAAA TTGTGTACTG TCATCTTGAC 
    CCCCAACTTC

    Gene models with high sequence identity

    1. AT5G58060.1 [+] show detail - SNARE-like superfamily protein
      E-value: 2e-82; Score: 302.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Synaptobrevin 2.7e-14
    ProfileScan Longin 20.335
    ProfileScan Synaptobrevin 15.018
    superfamily Longin-like 1.1e-41
    HMMPanther SNARE PROTEIN YKT6 3.8e-88
    HMMPanther SNARE PROTEINS 3.8e-88
    Gene3D Longin 2e-42

    See the detailed result >

    AT5G58060.1

    Model type
    Protein coding
    Short Description
    SNARE-like superfamily protein
    Curator Summary
    member of YKT6 Gene Family
    Computational Description
    YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR