K17746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17746

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17746

Determination of introduced cDNA(s)

  • J013067E14 - Rice Full-length cDNAs - Original: J013067E14

    full reading [+] show sequence

    Nucleotide sequence: J013067E14 - full reading 
    GACCGAGGCG TGCGCCAGCC ACTGAGAAGG AGAAGAGGTC CTCCGGATCA 
    AAGCGGCACC GACGACGCCG GCGAGGCCAC TACTACCATA TCATAGTACA 
    TACTAGTACA AGACTGGAGG GCTAGTGGGG TGGGGGTACA ATCCAATCCA 
    ATCCAATCAA ATCACATCGA TCGACGCCGC AACCCAGCAG CAGCAGCGGA 
    ACCCTAGCCA AGCCACCATG AGCAAGCTCT GCCAGTCGGC GTGCAAGGCC 
    GCCAAGTCTC TCCTCTCCGC CACCGCCGCC GCCTCCTCCC CGCGCACCTC 
    CCTCCTAGCC GAGGGGAGGA ACGCGGCGCT GGCCACCCTC ACCAACCTGG 
    GGAGGAAGAC CCTCCCCACA GCTTACGCCT ACTCCTACCA CCACAACTCC 
    TCCGCCGCCG CCGCCGGATG GCTCGCTGCC ATCCCCGCCG CTGTTTACAT 
    GCTACAGGAT CAGGAGGCGC ATGCTGCAGA GATGGAGCGC ACCTTTATCG 
    CCATCAAGCC TGACGGCGTC CAAAGGGGCC TGATTTCTGA GATACTGTCC 
    CGATTTGAAA GAAAAGGATT CAAGCTTGTT GCCATCAAGC TGGTGGTTCC 
    ATCCAAAGAA TTTGCTCAGA AGCACTATCA TGATTTGAAA GACAGACCTT 
    TCTTCAATGG ATTGTGTGAC TTCCTTAGCT CTGGCCCTGT GCTTGCCATG 
    GTTTGGGAAG GAGAGGGTGT TATCAAGTAC GGGAGAAAAC TGATTGGTGC 
    TACAGACCCA CAGAAGTCTG AACCAGGAAC CATCAGGGGT GACCTTGCTG 
    TTGTTGTTGG CAGGAACATC ATCCATGGAA GCGATGGCCC AGAGACTGCA 
    AAGGCTGAGA TTGGTCTCTG GTTTGAGCCC AGGGAGCTGG TCTCTTACAC 
    CAGCAACGAA GAGAAGTGGA TCTACGGGGT CAACTAACCG GCGAATCATC 
    TCCCCTGTTT GTTTTGTTTT TTTTTCATTT TCTCTCACTT TACCTAATTA 
    CATCACCATG GAAGAGTGTA ATAAAGTTGC GATCGTGACA TTTGGGGTTA 
    TGCCCATGTG ATCTGGCGCA AATAAGAGGC CTCAAGAAGA ATTGTCTACC 
    TTCGATTGTA GAGCGTGCAC TGAGTAATCA GACCATCACC TTCACTCAAA 
    TGGTCGAACG GATGGTGATG CCACTTGTTT TGTTATTGTT ATATAATGGT 
    ACTACATGTT GTC

    Gene models with high sequence identity

    1. AT4G11010.1 [+] show detail - nucleoside diphosphate kinase 3
      E-value: 3e-82; Score: 302.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Nucleoside diphosphate kinase, core 7.6e-33
    FPrintScan Nucleoside diphosphate kinase, core 5.3e-50
    FPrintScan Nucleoside diphosphate kinase, core 5.3e-50
    FPrintScan Nucleoside diphosphate kinase, core 5.3e-50
    FPrintScan Nucleoside diphosphate kinase, core 5.3e-50
    FPrintScan Nucleoside diphosphate kinase, core 5.3e-50
    HAMAP Nucleoside diphosphate kinase, core 33.456
    Gene3D Nucleoside diphosphate kinase, core 1.2e-58
    superfamily Nucleoside diphosphate kinase, core 1.5e-58
    HMMPfam Nucleoside diphosphate kinase, core 5.4e-53
    PatternScan Nucleoside diphosphate kinase, core 0
    HMMSmart Nucleoside diphosphate kinase, core 2.6e-87

    See the detailed result >

    AT4G11010.1

    Model type
    Protein coding
    Short Description
    nucleoside diphosphate kinase 3
    Curator Summary
    nucleoside diphosphate kinase 3 (ndpk3), located to the inter-membrane space in mitochondria
    Computational Description
    nucleoside diphosphate kinase 3 (NDPK3); FUNCTIONS IN: nucleoside diphosphate kinase activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G23900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR