K17751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17751

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17751

Determination of introduced cDNA(s)

  • J033133C18 - Rice Full-length cDNAs - Original: J033133C18

    full reading [+] show sequence

    Nucleotide sequence: J033133C18 - full reading 
    GAGTTCATTG AACTTCACAT AAGCTCACCA AGTAACCAAA ACACATAAGC 
    TCAGCTTCAG CTCAGTCTCC TCCATGGAGC CCAAGTCTTC TTCTTCCTCA 
    CACTATCTGC AGCCATCTGC AACATTGCCA TCAACAAGAA GAAACTCATT 
    CCAAGGAGTG GGAGCTGAAG CTGGAGGAGG AGGAGGAGGC ATGAACCCAT 
    TCGGGCCCAC ATTCAGTGAC CCACTCTGCA GCCTCAACCT CAAGGAGACC 
    TCAGAGTTCG TGAGGTCATC CTTCCCCATG GCTACCATGG CGAGGAGCAA 
    CAGCAGCAAC GGCGCCACCG GCAATGGCGG CCATGGCTAC CACCGCGGGA 
    CCTCCACGGC CTCTTCATCC TCTTCCTCCT CGGCCTCAGC TCAGAGGAGG 
    CGAGCCGAGC AGCAGCAGCA GCAGGTGCCA GCTACTCCAG GGCGGCCATT 
    GCTGTTCTTC AATTCCTCGA GCCCTGCACA TCACCAGCTC GTCTCCGCGA 
    GGAGGTCGGT GCCTTCCAAG TGGGAGGATG CGGAGAAGTG GGTGAGGCAG 
    GCGTCGTCCG ACCACCATGG CGGCCATCAC CACCACCATG GCAAGGGCTC 
    CAAGCTTCAG GAGGAGAAGA GGGCGTCGGC GGTGAGGAGG TCGGTGGATG 
    CTGACGTCAC TGCTCTTGCT CTCTACACTG CTCCTGCTGC AGAAGTGTTC 
    CTCAAAGACA AGTTCACTGA CAATGTGGAG CCCTCCAAGG AGAGCTTCGT 
    GTTCCGGAGC TCCTACTGCG AGCCAACAAA GAACACGGCG GCGCAGGCGG 
    TGGCCGCCGG CAACGGCATC GACCACCGGC GTGACATCGG CACGGAGATG 
    ACTCCGCTGG GCAGCTCCAC CACCTCGAGG TGCCACACGC CGATCAAGAG 
    CACCTCGCCG GCTAGGCACA ACACGCCGGC GAGCCGGTCG GGCCCCCTGG 
    TGCCGTACGC CGGCGGTGGC GGCGGCGCCG GCCAGGACAT CTCGGACCTC 
    GCCGACTGCC ACTTCGCCAA GCTGGACCTC GGCGCGCAGT TCGACGCCAT 
    GCTCATCAAC TGGAGCTCCA AGGAGGAGGA GGAGGAGGAG GTGTCCAAGA 
    GCTTGAGGCA CTTCGAGGCC AGCGTCGCCG CCGTCGGCGA GAAGCGCGGC 
    GGCGCCGGCG ACTGCCGGTG GGAGGACGAT GACAGGGCCA AGAGCTGCAT 
    AAGGTATCAG AGGGAAGAGG CAAAGATTCA AGCTTGGATC AACCTGGAGA 
    GTGCCAAGGC TGAAGCACAG TCCAGAAAGC TAGAGGTGAA GATTCAGAAG 
    ATGAGATCAA ACCTGGAGGA GAAGCTGATG AGGAGGATGA CGACCGTGCA 
    CCGGCGCGCC GAGGAGTGGA GAGCGACGGC GCAGGCGCAG CACCTCCAGC 
    AGCTGAAGCG CGCCGCCGAG CAAGTCCGGC GGGCCAAGGC CACCAGCCAC 
    CATCACCACC ACCACCACCT CGCCGGCAGC AACGCCTCCT GCGGCTGCTT 
    CCCCTGCAAT GGCAGCAACA ACATCATCAG TGGCAACCTC CTGAACTACT 
    ATTAGATATG ATCAGCTAGC CGCCATGGAA GAAGGATCAA GAATGCCAAT 
    TTGTTCGGGA GATCAACGGG TTCTTGTTGA TTGTAGTGGA TGTTTGGGAC 
    GTGTGAAGAT GGAGATGTGG GAGATAATGG TGTCATGTGT ATCAAAAAAC 
    TCTGATTTTT CAAGGTGATA TATACCAGAT TGCTGAATGC

    Gene models with high sequence identity

    1. AT1G53860.1 [+] show detail - Remorin family protein
      E-value: 2e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Remorin, C-terminal 2.8e-25

    See the detailed result >

    AT1G53860.1

    Model type
    Protein coding
    Short Description
    Remorin family protein
    Computational Description
    Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 458 Blast hits to 455 proteins in 58 species: Archae - 2; Bacteria - 9; Metazoa - 29; Fungi - 14; Plants - 379; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR