K17804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17804

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17804

Determination of introduced cDNA(s)

  • J033107D20 - Rice Full-length cDNAs - Original: J033107D20

    full reading [+] show sequence

    Nucleotide sequence: J033107D20 - full reading
    GGGGAGAGAG ATACGCGACA AAACAAATCC GCCCCCGAGA AAAGGAGGCC 
    ACGAAATTAC GAGAATGCCA CTCAACCTCG CCTCCTCTCC CGCCGCCGCC
    GCCGCCGCCA AGGTCTGCGC CGGCGTGCGC GCGTCCCCGC GCCACCTCCT
    CCCCCGCGCT CTTGACCACC AGAGCCGCCG CGTCCTCAGC TTGTCGTCCT
    CGTCGTCGGC GGGGCGTGCG GCGGGTGTGC GGGCCATGGC CGCGGCGGAG
    GCCGGTGCGT CGACGGCGAC ACAGGCTAAG TCGAGCGCAG GAGTCAAACA
    AGCACTGATA TCATTGTCGG ATAAAACAGA CTTGGCCTAT CTTGGGAATG
    GCCTTCAAGC CTTGGGGTTT TCTATTATTT CGACTGGTGG CACAGCATCA
    AGCCTGGAAG CAGCTGGAGT TAATGTTACA AAAGTTGAAC AAATTACAAA
    TTTTCCTGAA ATGCTTGATG GTAGAGTTAA AACATTGCAC CCCAGTGTAC
    ATGGTGGTAT TCTTGCAAGA AGAGACCAGG AGCATCATCT TAAGGCATTG
    AATGAGCATG GCATTGGGAC ATTTGATGTG GTTGTGGTGA ACTTGTATCC
    ATTCTATAAC AAGGTCACCT CTGGTGTAAT TTCTTTCGAG GATGGCATTG
    AAAACATTGA TATCGGTGGA CCTACGATGA TCCGAGCAGC AGCTAAGAAT
    CATAAGGATG TTCTTGTTAT GGTGGATCAT GAAGATTACC CTGCTCTATT
    AGAGTATCTG CAAGGAAAAC AAGATGACCA GCAATTCCGC AAGATGCTAG
    CATGGAAAGC TTTCCAACAT GTCGCTTCTT ATGATTCAGC TGTCTCAGAA
    TGGTTGTGGA AGCAATCGAA CAAAGGAGAT GTATTCCCCC CGAACTTCAC
    CGTGCCCCTG TCCCTGAAAT CTACACTTCG TTATGGTGAA AATCCTCATC
    AAAAAGCTGC CTTCTATGGG GACAAGAGTC TTTCTGTAGT TAATGCTGGT
    GGTATTGCAA CAGCAATTCA GCACCATGGG AAGGAAATGT CTTACAACAA
    CTACTTAGAT GCGGATGCTG CATGGAACTG TGTATCAGAG TTTGAGAGTC
    CTACGTGTGT TGTGGTTAAG CACACAAATC CATGTGGAGT AGCATCCCGA
    CAGGATATTC TTGAAGCATA CAGGTTGGCT GTAAAGGGAG ATCCTGTTAG
    TGCATTTGGT GGGATAGTTG CTTTCAATAC GACAATTGAT GAGGATCTTG
    CAAAAGAAAT CCGTGAATTC AGGAGCCCTA CAGATGGACA GACGCGAATG
    TTCTACGAGA TTGTTGTTGC ACCCGGCTAT ACAGAAAAGG GTCTTGAGAT
    CCTCAAAGGG AAATCAAAGA CATTGAGGAT ACTGGAGGCG AAGAGAAGTG
    GAAAAGGGAT GCTATCACTC AGGCAAGTCA GTGGTGGCTG GTTGGCTCAA
    GAGTCTGATG ATCTAACCCC TGAAGATATC ACCTTCACAA CAGTGTCCGA
    GAGAGCTCCT CAAGACAGTG AGCTCTCTGA TGCCAAATTT GCCTGGCTTT
    GTGTAAAGCA CGTAAAGAGT AACGCCATTG TGATAGCCAA GAATAACTGC
    ATGTTAGGCA TGGGAAGTGG CCAGCCAAAC AGACTGGAGA GTCTGAGAAT
    TGCTTTCAGG AAAGCAGGAG AGGAGGCCAA AGGAGCTGCT TTGGCCAGTG
    ATGCATTCTT CCCATTCGCT TGGAACGACG CCGTGGAGGA GGCGTGCCAG
    AACGGCATCG GCGTGATCGC GGAGCCGAGC GGCAGCATGA GGGACGGCGA
    CGCCGTCGAC TGCTGCAACA AGTACGGCGT CTCCCTCCTC TTCACCGGCG
    TCAGGCACTT CAGGCACTGA GCTAGCTAGC CTCATGAACC TTGATCTTCC
    TGCAAAAAAA GGAAAAAAAA CATGGGCATG TCAGATCGAT CGCTCTTTCT
    GTATCACAAG AGCATGCAGA TCGACCAGCG TTTGATCACC TTGAGAAAAA
    CTCTTGACGG CTTGTACTAG GCTGCCTGCC ACTGGTGTGA CAGAATTTGA
    TCAGCTTGAC ATTTTGCAAT AAGATTCATG GTGATAATAA GATTAGGATG
    TCTCGT

    Gene models with high sequence identity

    1. AT2G35040.2 [+] show detail - AICARFT/IMPCHase bienzyme family protein
      E-value: 0; Score: 883.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AICARFT/IMPCHase bienzyme 9e-218
    HMMSmart MGS-like 2e-47
    HMMSmart AICARFT/IMPCHase bienzyme, transformylase domain 7.6e-161
    HMMPfam AICARFT/IMPCHase bienzyme, transformylase domain 1.4e-127
    HMMPfam MGS-like 2.1e-22
    HMMPIR AICARFT/IMPCHase bienzyme 2.6e-295
    superfamily AICARFT/IMPCHase bienzyme, transformylase domain 7.4e-117
    superfamily Methylglyoxal synthase-like 5.9e-63
    HMMTigr AICARFT/IMPCHase bienzyme 2.7e-165
    Gene3D no description 7e-69
    Gene3D no description 1.7e-50
    HAMAP PUR9_MF_00139 41.859

    See the detailed result >

    AT2G35040.2

    Model type
    Protein coding
    Short Description
    AICARFT/IMPCHase bienzyme family protein
    Computational Description
    AICARFT/IMPCHase bienzyme family protein; FUNCTIONS IN: phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; INVOLVED IN: response to cold, purine nucleotide biosynthetic process; LOCATED IN: stromule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AICARFT/IMPCHase bienzyme, transformylase domain (InterPro:IPR013982), AICARFT/IMPCHase bienzyme (InterPro:IPR002695), MGS-like (InterPro:IPR011607).
    Link
    InterPro Scan - TAIR