K17804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17804

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17804

Determination of introduced cDNA(s)

  • J033107D20 - Rice Full-length cDNAs - Original: J033107D20

    full reading [+] show sequence

    Nucleotide sequence: J033107D20 - full reading 
    GGGGAGAGAG ATACGCGACA AAACAAATCC GCCCCCGAGA AAAGGAGGCC 
    ACGAAATTAC GAGAATGCCA CTCAACCTCG CCTCCTCTCC CGCCGCCGCC 
    GCCGCCGCCA AGGTCTGCGC CGGCGTGCGC GCGTCCCCGC GCCACCTCCT 
    CCCCCGCGCT CTTGACCACC AGAGCCGCCG CGTCCTCAGC TTGTCGTCCT 
    CGTCGTCGGC GGGGCGTGCG GCGGGTGTGC GGGCCATGGC CGCGGCGGAG 
    GCCGGTGCGT CGACGGCGAC ACAGGCTAAG TCGAGCGCAG GAGTCAAACA 
    AGCACTGATA TCATTGTCGG ATAAAACAGA CTTGGCCTAT CTTGGGAATG 
    GCCTTCAAGC CTTGGGGTTT TCTATTATTT CGACTGGTGG CACAGCATCA 
    AGCCTGGAAG CAGCTGGAGT TAATGTTACA AAAGTTGAAC AAATTACAAA 
    TTTTCCTGAA ATGCTTGATG GTAGAGTTAA AACATTGCAC CCCAGTGTAC 
    ATGGTGGTAT TCTTGCAAGA AGAGACCAGG AGCATCATCT TAAGGCATTG 
    AATGAGCATG GCATTGGGAC ATTTGATGTG GTTGTGGTGA ACTTGTATCC 
    ATTCTATAAC AAGGTCACCT CTGGTGTAAT TTCTTTCGAG GATGGCATTG 
    AAAACATTGA TATCGGTGGA CCTACGATGA TCCGAGCAGC AGCTAAGAAT 
    CATAAGGATG TTCTTGTTAT GGTGGATCAT GAAGATTACC CTGCTCTATT 
    AGAGTATCTG CAAGGAAAAC AAGATGACCA GCAATTCCGC AAGATGCTAG 
    CATGGAAAGC TTTCCAACAT GTCGCTTCTT ATGATTCAGC TGTCTCAGAA 
    TGGTTGTGGA AGCAATCGAA CAAAGGAGAT GTATTCCCCC CGAACTTCAC 
    CGTGCCCCTG TCCCTGAAAT CTACACTTCG TTATGGTGAA AATCCTCATC 
    AAAAAGCTGC CTTCTATGGG GACAAGAGTC TTTCTGTAGT TAATGCTGGT 
    GGTATTGCAA CAGCAATTCA GCACCATGGG AAGGAAATGT CTTACAACAA 
    CTACTTAGAT GCGGATGCTG CATGGAACTG TGTATCAGAG TTTGAGAGTC 
    CTACGTGTGT TGTGGTTAAG CACACAAATC CATGTGGAGT AGCATCCCGA 
    CAGGATATTC TTGAAGCATA CAGGTTGGCT GTAAAGGGAG ATCCTGTTAG 
    TGCATTTGGT GGGATAGTTG CTTTCAATAC GACAATTGAT GAGGATCTTG 
    CAAAAGAAAT CCGTGAATTC AGGAGCCCTA CAGATGGACA GACGCGAATG 
    TTCTACGAGA TTGTTGTTGC ACCCGGCTAT ACAGAAAAGG GTCTTGAGAT 
    CCTCAAAGGG AAATCAAAGA CATTGAGGAT ACTGGAGGCG AAGAGAAGTG 
    GAAAAGGGAT GCTATCACTC AGGCAAGTCA GTGGTGGCTG GTTGGCTCAA 
    GAGTCTGATG ATCTAACCCC TGAAGATATC ACCTTCACAA CAGTGTCCGA 
    GAGAGCTCCT CAAGACAGTG AGCTCTCTGA TGCCAAATTT GCCTGGCTTT 
    GTGTAAAGCA CGTAAAGAGT AACGCCATTG TGATAGCCAA GAATAACTGC 
    ATGTTAGGCA TGGGAAGTGG CCAGCCAAAC AGACTGGAGA GTCTGAGAAT 
    TGCTTTCAGG AAAGCAGGAG AGGAGGCCAA AGGAGCTGCT TTGGCCAGTG 
    ATGCATTCTT CCCATTCGCT TGGAACGACG CCGTGGAGGA GGCGTGCCAG 
    AACGGCATCG GCGTGATCGC GGAGCCGAGC GGCAGCATGA GGGACGGCGA 
    CGCCGTCGAC TGCTGCAACA AGTACGGCGT CTCCCTCCTC TTCACCGGCG 
    TCAGGCACTT CAGGCACTGA GCTAGCTAGC CTCATGAACC TTGATCTTCC 
    TGCAAAAAAA GGAAAAAAAA CATGGGCATG TCAGATCGAT CGCTCTTTCT 
    GTATCACAAG AGCATGCAGA TCGACCAGCG TTTGATCACC TTGAGAAAAA 
    CTCTTGACGG CTTGTACTAG GCTGCCTGCC ACTGGTGTGA CAGAATTTGA 
    TCAGCTTGAC ATTTTGCAAT AAGATTCATG GTGATAATAA GATTAGGATG 
    TCTCGT

    Gene models with high sequence identity

    1. AT2G35040.2 [+] show detail - AICARFT/IMPCHase bienzyme family protein
      E-value: 0; Score: 883.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AICARFT/IMPCHase bienzyme 9e-218
    HMMSmart MGS-like 2e-47
    HMMSmart AICARFT/IMPCHase bienzyme, transformylase domain 7.6e-161
    HMMPfam AICARFT/IMPCHase bienzyme, transformylase domain 1.4e-127
    HMMPfam MGS-like 2.1e-22
    HMMPIR AICARFT/IMPCHase bienzyme 2.6e-295
    superfamily AICARFT/IMPCHase bienzyme, transformylase domain 7.4e-117
    superfamily Methylglyoxal synthase-like 5.9e-63
    HMMTigr AICARFT/IMPCHase bienzyme 2.7e-165
    Gene3D no description 7e-69
    Gene3D no description 1.7e-50
    HAMAP PUR9_MF_00139 41.859

    See the detailed result >

    AT2G35040.2

    Model type
    Protein coding
    Short Description
    AICARFT/IMPCHase bienzyme family protein
    Computational Description
    AICARFT/IMPCHase bienzyme family protein; FUNCTIONS IN: phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; INVOLVED IN: response to cold, purine nucleotide biosynthetic process; LOCATED IN: stromule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AICARFT/IMPCHase bienzyme, transformylase domain (InterPro:IPR013982), AICARFT/IMPCHase bienzyme (InterPro:IPR002695), MGS-like (InterPro:IPR011607).
    Link
    InterPro Scan - TAIR