K17814

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17814

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17814

Determination of introduced cDNA(s)

  • J023087B10 - Rice Full-length cDNAs - Original: J023087B10

    full reading [+] show sequence

    Nucleotide sequence: J023087B10 - full reading
    TTAAGGTCTT CTTTTGCAAG TATAATGACC CAATATATGT TAAGATGGAA 
    AAGCTGGAGA TTATGATAAA GCTTGCCTCT GACAGAAACA TAGATCAGGT
    TCTATTGGAA TTCAAAGAGT ATGCCACAGA GGTGGATGTT GACTTTGTCC
    GCAAAGCTGT TCGTGCTATT GGAAGATGTG CAATTAAGTT GGAGAGAGCT
    GCTGAAAGGT GTATCAGTGT TTTGCTTGAG CTGATTAAGA TAAAGGTTAA
    TTATGTTGTG CAGGAGGCTA TAATTGTTAT TAAGGACATC TTCAGGCGCT
    ACCCTAATAC GTATGAGTCG ATCATCGCAA CACTCTGTGA AAGCCTAGAC
    ACCTTAGATG AACCAGAGGC TAAGGCATCA ATGATTTGGA TTATTGGAGA
    ATATGCTGAA AGGATTGACA ATGCTGACGA ACTTCTTGAG AGCTTCTTGG
    AAACATTCCC AGAAGAACCA GCATTAGTTC AATTGCAGTT ACTAACGGCA
    ACTGTTAAGT TGTTCCTTAA AAAGCCAACT GAGGGGCCTC AACAGATGAT
    ACAGGCTGTT CTCAATAATG CAACAGTTGA AACAGACAAT CCTGATTTGC
    GCGACCGAGC TTATATATAC TGGCGACTTC TTTCTACTGA TCCTGAGGCA
    GCTAAAGATG TAGTTTTGGC AGAGAAACCT GTGATCAGCG ATGATTCCAA
    CCAGCTTGAT TCTTCTCTCC TAGATGATCT GCTAGCCAAT ATTTCTACCC
    TTTCATCAGT TTATCACAAG CCTCCAGAAG CATTTGTTAG CCGCGTTAAA
    ACAGCTCCTA GGGCTGATGA TGAGGAGTTT GCTGATACAG CTGAAACAGG
    ATATTCGGAG TCACCATCTC AGGGTGTTGA TGGGGCATCA CCTTCCTCTA
    GTGCTGGCAC TTCTTCTAAT GTTCCAGTGA AGCAGCCAGC AGCACCAGCT
    GCTCCTGCTC CAATGCCAGA CCTCCTTGGT GATTTGATGG GTATGGATAA
    CTCCATTGTT CCTGTTGATG AACCAACAGC ACCTTCAGGC CCTCCACTAC
    CTGTTTTGTT GCCATCAACC ACTGGCCAAG GACTGCAGAT CAGCGCACAA
    CTAGTGCGGC GTGATGGCCA AATATTCTAT GATATATCTT TTGATAATGG
    CACTCAAACT GTGCTAGATG GATTCATGAT TCAGTTTAAC AAAAATACCT
    TTGGCCTTGC AGCCGGTGGT GCACTTCAGG TCTCTCCACT GCAACCTGGG
    ACCTCGGCCA GGACGCTGCT ACCTATGGTG GCATTCCAGA ATCTCTCTCC
    TGGAGCGCCA AGCTCACTGC TGCAGGTTGC GGTGAAGAAT AATCAGCAAC
    CTGTGTGGTA CTTCAATGAC AAAATCCCTA TGCATGCCTT CTTTGGTGAA
    GATGGCAAAA TGGAACGAAC AAGTTTTCTT GAGGCCTGGA AATCTTTACC
    TGATGACAAC GAATTTTCGA AAGAGTTCCC CTCTTCTGTC GTCAGCAGCA
    TAGATGCGAC CGTTGAGCAC CTTGCAGCAT CAAATGTGTT CTTTATCGCC
    AAGAGGAAAA ACTCAAACAA GGATGTTCTG TACATGTCTG CAAAGATTCC
    GCGTGGAATC CCCTTCCTGA TAGAGCTTAC TGCTGCAGTC GGTGTTCCTG
    GCGTGAAGTG TGCGGTCAAA ACTCCAAACA AGGAGATGGT GGCTCTCTTC
    TTCGAAGCCA TGGAGTCTCT TCTCAAGTGA TACAAAATTG AAGGATCATT
    GTTCCTTCCA AATTGATCAG TTCATGAGCT ATTGTAGGTT TGGATGCGGC
    GTTGTTTCAC AGGAGCTGGT GTGAATTGTA TTTGTTGTTC TTTGTATTAG
    ATTACTGTAT TTAAACTGCT AGTTTCCTGG TTTCAAAGTT TTTTCACGAC
    GAGC

    Gene models with high sequence identity

    1. AT4G11380.2 [+] show detail - Adaptin family protein
      E-value: 0; Score: 816.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 3.1e-56
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain 3.1e-37
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain 2.7e-35
    HMMSmart Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 1.9e-06
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUN 1.4e-270
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT 1.4e-270
    Gene3D Armadillo-like helical 3.4e-84
    Gene3D Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain 1.8e-31
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 3.5e-30
    HMMPfam Clathrin/coatomer adaptor, adaptin-like, N-terminal 2.6e-66
    HMMPfam Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain 4e-31
    HMMPfam Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 7.3e-08

    See the detailed result >

    AT4G11380.2

    Model type
    Protein coding
    Short Description
    Adaptin family protein
    Computational Description
    Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
    Link
    InterPro Scan - TAIR