K17820

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17820

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17820

Determination of introduced cDNA(s)

  • J023002M16 - Rice Full-length cDNAs - Original: J023002M16

    full reading [+] show sequence

    Nucleotide sequence: J023002M16 - full reading 
    GCGCGATTCG CCGTCTCCAT CTCGTCTCCC GCTTCCTCCC CGCGTCCGCC 
    ACGCCACCCC CCACCTCGCC GCCTCGCCGT GGCTGCTCCT CACCTCCCCT 
    CCCCTCCCCG CCGCCGGTGC TCCGGCCTTC GCTGCCGCCG TGCTTTCTCT 
    ATCTATCCTC TTCCCCCACG CGGACGGGGG TGCGGCGATT CGGGCTCTCC 
    GCCGGACACG CGTCGCTTCG GCCTCAACTG AAGAGCCACG CTTCGGTCTC 
    GACTCTCGAA CCCCCAAGTT TGTTGCGTTG CAGAAGATTC GTTTGATGCG 
    TGCTGAAGTA CAATCGTGAA AGGAAGGAAC TGTGCCAACA CCACCTGATT 
    GGTACTCCTG TCGTTCTTGG ACAGGAGATT GATTTTGCTT CGGTAGGAGA 
    CCCAATTGCG GATGGAATAT GCACACGTGC GTTGTTAGGT AATGACGAGC 
    TTGCCTGATA GGGGTGTATC ATCGTCTTCA TCTGATCCGT TGTGCGAGGG 
    TAACATTGCA CCTTGTTCTT CTAGCTCGGA ACAGAAGGAG GATTGTAGCC 
    TGAAACAATC GAAAACCTCG ATCCTGTCCT GCGTTTTCAA TTCACCTTTC 
    AATATCTTTG AGGCGCACCA GGATTCGTCC GCAAACAAGT CGCCGAAATC 
    GTCCTCTGGA TCCTATGATT GGTCGAGGGT ATTGAGGAGG ATCGTGTGCT 
    CTGGCTCAAT GTGGCGTTTT CTGGGCACCT CCAAGGTTCT CACTTCAAGT 
    GATGTGTGGT TCCTTGGTAA ATGTTACAAG CTTTCGTCGG AGGAGTCGTC 
    TAGTGACTCA GATTCCGAAA GTGGGCATGC CACATTTCTT GAGGACTTCT 
    CGTCAAGGAT ATGGATCACT TATCGCAGAG GCTTTGATGC CATCTCTGAT 
    TCCAAGTATA CTAGTGATGT GAACTGGGGC TGCATGGTCA GAAGCAGCCA 
    GATGCTGGTT GCTCAGGCAT TGATTTTCCA CCATCTTGGC AGATCTTGGA 
    GAAGGCCATT GGAGAAGCCA TATAACCCAG AATATATAGG GATCTTACAC 
    ATGTTTGGTG ATTCTGAAGC TTGTGCTTTC TCAATTCACA ATTTACTTCA 
    AGCTGGAAAT AGTTATGGTC TGGCTGCTGG ATCATGGGTG GGTCCATACG 
    CCATGTGTCG GGCATGGCAA ACCCTTGTCC GCACCAATAG GGAGCAACAT 
    GAAGTTGTTG ATGGGAATGA AAGTTTCCCT ATGGCTCTTT ATGTGGTATC 
    CGGTGATGAA GATGGTGAAA GAGGTGGAGC TCCAGTTGTT TGTATTGATG 
    TTGCTGCTCA GCTTTGCTGT GATTTCAACA AAGGTCAATC AACTTGGTCA 
    CCGATTCTTT TGCTGGTCCC TCTGGTTCTT GGTCTTGACA AAATTAATCC 
    AAGGTACATT CCTTTACTAA AGGAGACGTT CACATTTCCT CAGAGCTTGG 
    GGATTTTGGG TGGAAAGCCT GGAACATCAA CCTACATTGC TGGGGTACAG 
    GATGACAGGG CGCTCTACCT AGATCCCCAT GAAGTTCAGA TGGCAGTTGA 
    TATTGCAGCT GATAACATAG AGGCAGACAC TTCTTCATAC CACTGCAGCA 
    CTGTACGAGA TTTGGCCCTA GACCTGATAG ATCCGTCATT GGCTATTGGT 
    TTTTACTGCC GTGATAAAGA TGACTTCGAT GATTTCTGTT CTCGCGCCAC 
    TGAGCTAGTA GATAAAGCCA ATGGAGCACC ACTCTTCACT GTTGTGCAGT 
    CGGTTCAACC GTCAAAACAA ATGTACAATC AGGACGATGT GTTGGGCATC 
    TCAGGGGATG GCAACATCAA TGTCGAGGAC CTCGATGCCT CAGGTGAAAC 
    AGGAGAGGAG GAATGGCAGA TTCTTTAGTG AAGGAACAAA ACTGACCTCA 
    TGAGGTACAG AAAACGTTGC GTCCAACACG TCGGTCGAAT GCCCTTGTTT 
    ATGTGTGGGT GAATAGAAAT GACTCGTTGT GTTGTCTACA GAACAAGCTG 
    GCACTGTCTC GATACCCCAG GGGGTTGGGT CTTGGGAGAA TCAGCTTTAG 
    GTGCTACCGA TGTAAAAATG TGATCAGTTC ATCGCTCATT CGTTGGAAAT 
    CTCCTTGTAT CATACATGCT CTTGTGGTTG GCTATAACTC AAAATTTATT 
    ATACGTTCTG TT

    Gene models with high sequence identity

    1. AT3G59950.1 [+] show detail - Peptidase family C54 protein
      E-value: 2e-120; Score: 430.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUTOPHAGY 4A 1.9e-169
    HMMPanther Peptidase C54 1.9e-169
    HMMPfam Peptidase C54 1.8e-100

    See the detailed result >

    AT3G59950.1

    Model type
    Protein coding
    Short Description
    Peptidase family C54 protein
    Computational Description
    Peptidase family C54 protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: autophagy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C54 (InterPro:IPR005078); BEST Arabidopsis thaliana protein match is: Peptidase family C54 protein (TAIR:AT2G44140.1); Has 844 Blast hits to 806 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 426; Fungi - 182; Plants - 81; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR