K17823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17823

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17823

Determination of introduced cDNA(s)

  • J023047E18 - Rice Full-length cDNAs - Original: J023047E18

    full reading [+] show sequence

    Nucleotide sequence: J023047E18 - full reading 
    GCGAGGATTA GATAAGCAAA ACAGCCACCT AAGCCCACGC CGCGAAGTCG 
    CCGCCACCGC CATGATCTCC GCGACGGCCA CCGCCGCCTT CCTCGCCGCG 
    GCGCCGGCCT CCTCCTCCTC CTGCACCACC CACCGCCGGC GCAGCGGCCT 
    TCCCGCCATC TCCGCGTCCC TCGCAACCGC CTCCTCCACT GAGGAGCCGC 
    TGCTGGTGCG GGCGGCGAGG GGCGAGGACG GGCTGCCGCG GCCGCCGGCG 
    TGGATGATGC GGCAGGTCGG GCGGTACATG GCGGAGTACC AGGCGCTCGC 
    CATGCGCCAC CCCTCGTTCC GGGAGCGGTC CGAGACGACC GAACTCATCG 
    TCGAGATCAC GCTGCAACCG TGGCGCGCCT TCGCGCCCGA CGGCGTCATC 
    CTGTTCTCGG ACATACTCAC GCCGCTGCCG GCCATTGGGG TGCCATTCGA 
    TATCTCCGAC TCCAAGGGGC CTGTGATCCA GTCTCCCGTG AGGTCCGAGG 
    AGCAGGTGAG GGAGCTCACC CCCATTGACT TCGAGAAGCT CCGGTTCGTC 
    GGTGAGTCGC TCAAGATTCT ACGCACTGAG ATTGATGGAC AAGCTGCTTT 
    GCTAGGATTT GTGGGGGCCC CATGGACAAT TGCAACTTAT GTTGTTGAAG 
    GGGGGATGAC CAACACTTAC ACAAATATAA AGAGCATGTG CCACACAGCA 
    CCAAATGTGT TAAGGGGACT TTTGTCTCAC CTTGCAGACG CCATATCTGA 
    ATACATTATT TACCAAGTAA ACTCTGGGGC TCAATGTATA CAAATATTTG 
    ATTCATGGGG TGGACAACTT CCACCTCATG TGTGGGAGCA GTGGTCAAAA 
    CCATATATCA AGCAGATTGT GAATAAGATT AAGATTGAAT GCCCCAATGT 
    ACCACTTGTT CTCTATATAA ATGGAAATGG AGGCTTGCTT GAGCGAATGA 
    CGGACACAGG AGTCGATGTT ATTGGTCTTG ACTGGACAGT GGATATGGCA 
    GATGGAAGGA GACGCCTTGG TAACAAAATT AGTGTACAGG GGAATGTTGA 
    CCCAGCATTT CTATTTTCTC CATTACCAGT ACTGACCGAT GAAATTCATA 
    GGGTTGTCAA ATCAGCTGGT CCAAAAGGTC ATATACTAAA CTTGGGCCAT 
    GGTGTTCTTG TAAAAACACC AGAAGAAGCT GTAGCTCATT TCTTTGATGT 
    CACGAGGAGC TTGAGATATG ACACACTTTT CCAAGGTTGT GTTACTGAAG 
    TTTTGGAGCC TGTTGCTTAA CAATGGCCAA TTGTCAGATA TTTTTTTTAA 
    TCAGCTGATC CATGGTGTAC CATCGTAGTT TTGTCTGCAA GCTATGTTGC 
    TCCTTTTGTT GGCCATGTCT TTGTAGGAAT ATCACGATTC GTGACCAGGT 
    CAATTCAATT TTATTCATTA CTCTTAATAG CTGTATTCCT TCATCCATCC 
    ACAAAACAAA AACAAAAAGG CATGCCACCT GGTTTTACAA GAAAAGCCAG 
    AGTAGGTTCA AGGTGTTTTG TCC

    Gene models with high sequence identity

    1. AT3G14930.2 [+] show detail - Uroporphyrinogen decarboxylase
      E-value: 2e-156; Score: 549.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uroporphyrinogen decarboxylase (URO-D) 1.4e-109
    PatternScan Uroporphyrinogen decarboxylase (URO-D) 0
    PatternScan Uroporphyrinogen decarboxylase (URO-D) 0
    HAMAP Uroporphyrinogen decarboxylase HemE 40.781
    HMMTigr Uroporphyrinogen decarboxylase HemE 4.8e-174
    HMMPanther Uroporphyrinogen decarboxylase HemE 8.3e-128
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 8.3e-128
    Gene3D no description 2.8e-110
    superfamily UROD/MetE-like 7.3e-109

    See the detailed result >

    AT3G14930.2

    Model type
    Protein coding
    Short Description
    Uroporphyrinogen decarboxylase
    Computational Description
    HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: Uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 7323 Blast hits to 7320 proteins in 2007 species: Archae - 103; Bacteria - 3942; Metazoa - 236; Fungi - 136; Plants - 121; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR