K17825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17825

Determination of introduced cDNA(s)

  • J013119E16 - Rice Full-length cDNAs - Original: J013119E16

    full reading [+] show sequence

    Nucleotide sequence: J013119E16 - full reading 
    GTTCCGCCTC TTATTTTTTC TTTTCTCTCC CCCAAATCTG ATCCCCTCCC 
    ACACGCAACA CGCGAGGCCG CGTCTAGGGT TAGGGTTCCC CTCCCCTTCG 
    GCCATGGACG AGCTCGCGGC GGCGTCGGCG GCGGCGAGGA GGAGGTGGGT 
    GCAGTGGGAG GAGGTCGTGG TGTCGAACGA CCGGGGGAGG CGCCTCGTGC 
    ACTACTACCT CCGGGGAGCG GCCGCGGGCG GCGGAGGAGG GGGAGAGGTG 
    AGGGAGCTTG CGGTGGTGGG GCGGGAGCGG AGCCCGCGGC ACATGTCGTA 
    CGTGGTGCAG GGGCGGTTCC TGCGGTCGCT GGCGGCGGCG GGGGTGGGGG 
    TGGGGGTGGG GGTGGAGGCC nCCGTGGGGG CGGTGGTGGC AGTGCCGTCG 
    CCGTCACGGT CGCCGCTGCC GGCTTCCGCG GAGGGCGGGG CGCCGAGGAA 
    ATGGAGGTCG AGGCGGGAGG TCGTGGACTG GCTGTCCTCC CTCGTTTCCG 
    GATGTAATTA CGGATCTTCT TCAATGTCTA ATAGGTTCAA TGAAAATCCA 
    TATGATGACA TTGAGTTCAC TGATGTTGCT GCTTCAAAGG ATGTTTCACA 
    TACATCATCA GTAAGGAATA ACTCAAAAGA GTTCACATGG TTAGGTCCTG 
    CATGGCTTTG CGAAAAGCGA TGGAAGCACT ACAGATCTTT CTGCCGTAAG 
    GGGATTACTA TTTCGGTGCA TAATTTTGTC TACATCCTGA GTGAGGAAAA 
    GAAGAGGCTC ATCGCCCAAG TGGAGGATCT GTATGAAGAT ACTAATTCAA 
    CCAACGTTGT CATGGTACGA TGGTTCGACA AAGTTGATGA GGTTGGTGTC 
    GAATTGCCAC CTGATGTTGG TGACAGAGAG ATTTTCTTTT CCCCTGGTCT 
    GCAAGATCTC AGTGTTGAAT GCATTGATGG ATTGGCTGCA GTCCTGAGTG 
    CTCAACACTT CGAGAAGTTC CAGAGTAGTC CAAAACATAG CTATTGGCAG 
    CCTTATATTT GTCGCCGACA GATTGATGAA GATGGCGTCA AACCTTTTGA 
    TGTAACCCAA TTGCAAGGTT ATTGGAGTCA AGAAGTGCTT AGGACAATGT 
    TCAATGCAGC TTCTTCTCTT AAGGTACGTT TCAAGGTCAC TAAAGGTGCT 
    TCTAGTTCAG ATGGGGCACA AAAGAGGAAG CGTGATGCAT TCAGTGAAAC 
    CGATCCACAG CAGTGTGTTC CTTCCGCTGC ATTCGGTTCT GATAGTCTCA 
    AGAATGATTT GGAACATAAA ACTCAAAAGC AGCTATATCC TGGTAGCCGT 
    GCTGAAGTCC TATCACAGGA CAGCGGTATA AGGGGCTGCT GGTTTAGATG 
    CTTTGTATTA AAGAGGCGCG GAGACAAAAT CAAGGTGCGA TATGAAGATC 
    TTCAGGATGC TGATGAGACA GGAAATCTGG AGGAGTGGGT TTTGCTAACA 
    AGGATTGCTA AACCTGATCA GTTGGGTATA CGCATCCCTG AAAGACCAAT 
    GGTGCGGCCA TATCATGTAC ATAGCAAGGA TCCATGCTCT TTCGATGCTG 
    GTTCCATTGT TGATGCATGG TGGAATAGTG GGTGGTGGGA GGGGATTGTA 
    TTGCAGCAGG GAAATGACAG ACGCCTTCAA GTTTATTTTC CTGGAGAAAA 
    GCAGATTGCT GATTTTTGTG AAGATGATTT GAGGCATTCA CGTGAGTGGG 
    CTGGTGGCAA ATGGAATTCC TTGGGGGAAA GAAAAGATAT CACACACCTG 
    TTGCCCCCCA CTTCAGTTCA TGAAGAGGGA GGTTTGCTTA GCAAACCTGT 
    TTCACAAGAA GGCAATCCCT CTTCAAAATT AGAATCTGAC AAGAGGTGTG 
    ATGACAAATC ATTGGGCACC AAGATTTCAC ATGATCAGAA GCATCAGAAG 
    CGTGTTCTGG CTGATCTCAC AGATGCTCTG AAATTCGATA ACCTGAAATG 
    GAGGCCAAGA AAGCGGAGCA GAAGATCTGG TTCCAAAAGG CAGTCAGACA 
    CTAGCAGTGG CAGTGGCAGC AGCAGCCAGG GCGACATGGA GGAGTCCAGC 
    CCCTGCGGAA GTTTTGCAGT GCTTAATTCA GCGCCCGATG AAGAAGTATG 
    CAAGAGCAGT GGAGAACCTC TTTTCATGAG GGTTTCCAAC CTGGTGATGT 
    CCAGATGAAG TCACTCCACG ACTGACATGT TTTAGCCTTT TCTTTCCGGA 
    TTTCAACAGC CTTGGCGAGA TGTGAGTTTG ATGCATCCCC AGGTTATTTA 
    GTCACAACTC ACAACTGGTA TCCTGATCAT CTTGAGAGCT CTGAATGCTT 
    ATTCGCTCGG ATGTCCAGGA TGCAAGCATG GAGGAGCACA CTGTTGTATT 
    TATGACTGAT CTAGATGAGT TTTACCATTT TGTCTCACTT TAGGGTCTTG 
    TAGGGTGTTT TAACCGTCTT GTTGTTTAGT TGGTGTTACA AAGATAGCTG 
    GCTCATTCCA CCTCGGCAGT TTCCAGAGTC CCTTTTTTGT CTTTGTTTCA 
    GCAGTCCAAT ATCCAATTTA ATTTGTTCAT CAGCTGTTAT AGATGTTCTT 
    ATAGTATACT CTCTGAAATG ATAATATTTA CATCGTC

    Gene models with high sequence identity

    1. AT1G68580.2 [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 4e-93; Score: 340.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Bromo adjacent homology (BAH) domain 5.2e-05
    HMMSmart Tudor-like, plant 0.3
    HMMSmart Tudor-like, plant 1.4e-10
    ProfileScan Bromo adjacent homology (BAH) domain 16.643
    HMMPfam Agenet 5.4e-15
    HMMPfam Bromo adjacent homology (BAH) domain 8.6e-09
    FPrintScan PRICHEXTENSN 2.6e-09
    FPrintScan PRICHEXTENSN 2.6e-09
    FPrintScan PRICHEXTENSN 2.6e-09
    FPrintScan PRICHEXTENSN 2.6e-09

    See the detailed result >

    AT1G68580.2

    Model type
    Protein coding
    Short Description
    agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR