K17830

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17830

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17830

Determination of introduced cDNA(s)

  • J023088M05 - Rice Full-length cDNAs - Original: J023088M05

    full reading [+] show sequence

    Nucleotide sequence: J023088M05 - full reading 
    GGTCGGCGAG GCCAAGGCAG GCAGGAAGCC ATGGGCGACA ACAGCGCCGC 
    CGCGGCGGCC GTGGCCGCGC CGCGCGGCAG GTTCGGCAGG ATCTGCGTCT 
    TCTGCGGCAG CAACGCCGGC AACCGCGCGG TGTTCGGCGA CGCGGCGCTC 
    CAGCTCGGGC AGGAGCTGGT GTCGAGAGGG ATCGAGTTGG TCTACGGTGG 
    CGGCAGCGTC GGGTTGATGG GCTTGATCGC GCAGACGGTT CTTGATGGCG 
    GCTGCGGTGT TCTCGGGGTG ATTCCAAAAG CACTCATGCC CACCGAGATA 
    TCAGGTGCAA GTGTTGGAGA AGTGAAAATT GTGTCTGACA TGCATGAGAG 
    GAAAGCTGAG ATGGCACGCC AATCCGATGC CTTCATCGCT CTTCCTGGAG 
    GGTATGGAAC AATGGAGGAG TTGTTAGAGA TGATAACTTG GTCACAACTT 
    GGAATTCATG ACAAACCAGT TGGGTTGCTG AATGTGGACG GTTACTATGA 
    TCCGTTGCTT GCGCTATTTG ATAAGGGTGC GGCAGAAGGA TTTATTAAGG 
    CCGATTGCAG ACAAATAATT GTTTCGGCAC CGACTGCGCA TGAGCTGCTG 
    AGAAAGATGG AGCAATACAC TCGTTCACAC CAGGAGGTAG CGCCACGTAC 
    AAGCTGGGAG ATGTCAGAGC TTGGTTATGG AAAGACACCA GAGGAATCGT 
    AGCATAATCT GCTAATGTGA CATTGTTCCT GAAGGAGAAT TGCAGCTGCT 
    CCTTTTATCT CCCATTTTGG TTACCTTATC GTGTTACCTG TCCAGTCAAC 
    TTCATCCGGT GAAGAAGATG CATAAGAAAA TATGTACCTA CCCTCGGTTT 
    TCCTGTGGGG GAATGAACGC ATGGTTATAG TCCGTATAAT ATTTCCTGCC 
    TTACATAAAT TAAGAGGCAT TTGAGC

    Gene models with high sequence identity

    1. AT5G11950.2 [+] show detail - Putative lysine decarboxylase family protein
      E-value: 2e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7e-58
    HMMTigr Conserved hypothetical protein CHP00730 1.5e-63
    superfamily Putative lysine decarboxylase 1e-54
    HMMPfam Conserved hypothetical protein CHP00730 4.5e-44

    See the detailed result >

    AT5G11950.2

    Model type
    Protein coding
    Short Description
    Putative lysine decarboxylase family protein
    Curator Summary
    Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
    Computational Description
    Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR