K17831

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17831

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17831

Determination of introduced cDNA(s)

  • J013151N02 - Rice Full-length cDNAs - Original: J013151N02

    full reading [+] show sequence

    Nucleotide sequence: J013151N02 - full reading
    GGCGGGCAGC AGCAGCAGCA AAGTCAGCGG CAACCAGCAA CCGCTTCTGT 
    AGGAGAGGCA GCGCCGCGGG CAGCCGGCCG GAGATGGCCG GCGCCGGCGC
    CGGCGAGAGC CTGGACCTCC CCGTGGTGGA CCTAGCGTCC TCCGACCTCG
    CCGCCGCCGC CAAATCCGTC CGAAAGGCTT GCGTGGAGTA CGGATTCTTC
    TACGTGGTCA ACCATGGAGC CGAGGGATTG GCGGAGAAGG TGTTCGGGGA
    GAGCAGCAAG TTTTTCGAGC AGCCGCTGGG GGAGAAGATG GCGCTGCTGA
    GGAACAGAAA CTACCTGGGG TACACCCCGC TTGGCGCCGA TAAGCTCGAC
    GCCTCGTCCA AATTCAAAGG AGATCTCAAT GAAAATTACT GTATCGGACC
    TATCAGAAAA GAAGGTTATC AGAATGATGC TAACCAATGG CCTTCTGAAG
    AGAATTTCCC ATGTTGGAAG GAGACAATGA AGCTATACCA TGAAACTGCA
    CTTGCTACTG GTAAAAGGAT ACTCTCTCTA ATTGCTCTGA GTTTGAATCT
    CGACGTTGAA TTCTTTGACT GCCCAGTGGC CTTTCTTCGG TTATTGCACT
    ACCCAGGTGA AGCTAACGAG TCCGATGATG GCAATTATGG TGCATCAGCT
    CACTCAGACT ATGGAGTACT AACACTTGTA GCAACAGATG GCACTCCTGG
    GCTGCAGATA TGCAGGGAGA AGGATAGGTG CCCCCAGCTT TGGGAAGACG
    TTCATCACAT TGAAGGGGCC CTGATTGTTA ATATCGGCGA TTTGCTACAA
    AGGTGGACTA ATTGTGTTTT CAGGTCTACA CTGCATCGCG TTGTTGCAGT
    TGGTAAAGAG CGATACTCTG TGGCTTTCTT TCTTCACACA AACCCTGATT
    TAGTGGTTCA ATGCTTGGAA AGCTGCTGCA GTGAGGCATG CCCACCGAGG
    TTCCCACCTA TAAGGAGCGG CGACTATTTG GAAGACCGAT TGAGGGCTAG
    ATACAAATAA TCCTACGTTG GCTGCGTACA TCCATGTTGG ATGTAAAGGC
    CAGGTTTTAA TCCATTTTCT GAAAAACACA AATAATCCTA CGTTTTTAAA
    TGTGTAAAGC TTAAGATTAG TGAACTTCAG TGAGCAGCTA TTCCGTTGAG
    ATGGACGGAA ACATCTTGAT CTTATATGTA GCCCATCTGC TGTTGCTGAT
    TTCTCGCGTG TGTTAATACT AGCTTTACTT ATGAGCAATC ATGTCAGCAT
    CTGGTGAAAT TTGTAACCGC CTTCGAGTGT CAACATATAT TTTTGCTCTT
    CACTGTTTTC AGGAAGACTG GACATAACCT CCACTGTATT TTCTGTTGCC
    AAAACATTGG TATAGAGTTT TTTGTATAAA GATTCTTATG ATGCTTTCAC
    GATTAAGGAA GACACAAATA AAGTAACTTT GCTCCC

    Gene models with high sequence identity

    1. AT4G16770.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 2e-79; Score: 293.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.3e-73
    HMMPfam Oxoglutarate/iron-dependent oxygenase 4.1e-19
    HMMPanther GIBBERELLIN OXIDASE-RELATED 1e-102
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1e-102
    superfamily Clavaminate synthase-like 1.3e-76
    FPrintScan Isopenicillin N synthase 4.3e-17
    FPrintScan Isopenicillin N synthase 4.3e-17
    FPrintScan Isopenicillin N synthase 4.3e-17
    FPrintScan Isopenicillin N synthase 4.3e-17
    FPrintScan Isopenicillin N synthase 4.3e-17
    FPrintScan Isopenicillin N synthase 4.3e-17

    See the detailed result >

    AT4G16770.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G16765.1); Has 6583 Blast hits to 6566 proteins in 839 species: Archae - 0; Bacteria - 934; Metazoa - 52; Fungi - 818; Plants - 3817; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR