K17831

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17831

Determination of introduced cDNA(s)

J013151N02 - Rice Full-length cDNAs - Original: J013151N02

full reading [+] show sequence

GGCGGGCAGC AGCAGCAGCA AAGTCAGCGG CAACCAGCAA CCGCTTCTGT 
AGGAGAGGCA GCGCCGCGGG CAGCCGGCCG GAGATGGCCG GCGCCGGCGC 
CGGCGAGAGC CTGGACCTCC CCGTGGTGGA CCTAGCGTCC TCCGACCTCG 
CCGCCGCCGC CAAATCCGTC CGAAAGGCTT GCGTGGAGTA CGGATTCTTC 
TACGTGGTCA ACCATGGAGC CGAGGGATTG GCGGAGAAGG TGTTCGGGGA 
GAGCAGCAAG TTTTTCGAGC AGCCGCTGGG GGAGAAGATG GCGCTGCTGA 
GGAACAGAAA CTACCTGGGG TACACCCCGC TTGGCGCCGA TAAGCTCGAC 
GCCTCGTCCA AATTCAAAGG AGATCTCAAT GAAAATTACT GTATCGGACC 
TATCAGAAAA GAAGGTTATC AGAATGATGC TAACCAATGG CCTTCTGAAG 
AGAATTTCCC ATGTTGGAAG GAGACAATGA AGCTATACCA TGAAACTGCA 
CTTGCTACTG GTAAAAGGAT ACTCTCTCTA ATTGCTCTGA GTTTGAATCT 
CGACGTTGAA TTCTTTGACT GCCCAGTGGC CTTTCTTCGG TTATTGCACT 
ACCCAGGTGA AGCTAACGAG TCCGATGATG GCAATTATGG TGCATCAGCT 
CACTCAGACT ATGGAGTACT AACACTTGTA GCAACAGATG GCACTCCTGG 
GCTGCAGATA TGCAGGGAGA AGGATAGGTG CCCCCAGCTT TGGGAAGACG 
TTCATCACAT TGAAGGGGCC CTGATTGTTA ATATCGGCGA TTTGCTACAA 
AGGTGGACTA ATTGTGTTTT CAGGTCTACA CTGCATCGCG TTGTTGCAGT 
TGGTAAAGAG CGATACTCTG TGGCTTTCTT TCTTCACACA AACCCTGATT 
TAGTGGTTCA ATGCTTGGAA AGCTGCTGCA GTGAGGCATG CCCACCGAGG 
TTCCCACCTA TAAGGAGCGG CGACTATTTG GAAGACCGAT TGAGGGCTAG 
ATACAAATAA TCCTACGTTG GCTGCGTACA TCCATGTTGG ATGTAAAGGC 
CAGGTTTTAA TCCATTTTCT GAAAAACACA AATAATCCTA CGTTTTTAAA 
TGTGTAAAGC TTAAGATTAG TGAACTTCAG TGAGCAGCTA TTCCGTTGAG 
ATGGACGGAA ACATCTTGAT CTTATATGTA GCCCATCTGC TGTTGCTGAT 
TTCTCGCGTG TGTTAATACT AGCTTTACTT ATGAGCAATC ATGTCAGCAT 
CTGGTGAAAT TTGTAACCGC CTTCGAGTGT CAACATATAT TTTTGCTCTT 
CACTGTTTTC AGGAAGACTG GACATAACCT CCACTGTATT TTCTGTTGCC 
AAAACATTGG TATAGAGTTT TTTGTATAAA GATTCTTATG ATGCTTTCAC 
GATTAAGGAA GACACAAATA AAGTAACTTT GCTCCC

Gene models with high sequence identity

AT4G16770.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
E-value: 2e-79; Score: 293.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	8.3e-73
HMMPfam	Oxoglutarate/iron-dependent oxygenase	4.1e-19
HMMPanther	GIBBERELLIN OXIDASE-RELATED	1e-102
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	1e-102
superfamily	Clavaminate synthase-like	1.3e-76
FPrintScan	Isopenicillin N synthase	4.3e-17
FPrintScan	Isopenicillin N synthase	4.3e-17
FPrintScan	Isopenicillin N synthase	4.3e-17
FPrintScan	Isopenicillin N synthase	4.3e-17
FPrintScan	Isopenicillin N synthase	4.3e-17
FPrintScan	Isopenicillin N synthase	4.3e-17

See the detailed result >

AT4G16770.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G16765.1); Has 6583 Blast hits to 6566 proteins in 839 species: Archae - 0; Bacteria - 934; Metazoa - 52; Fungi - 818; Plants - 3817; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).
Link: InterPro Scan - TAIR