K17834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17834

Determination of introduced cDNA(s)

  • J033075F01 - Rice Full-length cDNAs - Original: J033075F01

    full reading [+] show sequence

    Nucleotide sequence: J033075F01 - full reading 
    GACGCACGAA ATATCCCACT CGCTTCGACA CTCTCTTCCC CTTCTTCTCC 
    CGGAGAAAAC CTCGAGCCAA GGCCCCGACT CCGACTCCGG TGATGTCGGC 
    GGCGGTGGGG GGAGCCGAGT TCCACGGGTT CCGTGGGGGT GGCGGCGGCG 
    CGGCGCAGCT GCAGAGGTCG CGGATGCTCG GAAGGCCGCT CCGTGTGGCG 
    ACCCCTCACG CGGCGGCCCC CGCTGGCGGC GGCGGGTCGT CGTCGGCCAG 
    CATACGCGCC GTCTCCGCGC CACTCAAGAA GGATGCATCT GAAGTTAAGA 
    GGAGCAAGGT TGAGATCATC AAGGAGAAGA GCAATTTTCT TCGGTACCCT 
    TTGAATGAGG AACTGGTCTC AGAGGCTCCA AATATTAATG ACAGCGCTGT 
    CCAGCTTATT AAATTTCATG GAAGCTATCA ACAGACGGAC CGTGATGTTC 
    GTGGGCAGGA GAATTACTCG TTTATGCTCC GAACAAAGAA TCCTTGTGGA 
    AAAGTTCCAA ACCAGCTTTA CTTGGCTATG GATACGCTAG CTGATGAATT 
    TGGTATTGGA ACACTCCGAT TGACGACCAG ACAAACATTT CAGCTGCATG 
    GCGTTCTTAA GAAGAACCTG AAGACTGTCA TCAGCACTGT TATAAAGAAT 
    ATGGGTTCAT TATTAGGTGC CTGTGGAGAT CTCAACAGAA ATGTACTTGC 
    ACCTGCAGCA CCTTATGTCA GGAAGGATAT TCTTTTTGCT CAAGAAACAG 
    CAGAGAATAT CGCAGCTCTT CTTACACCAC AATCTGGGGC TTATTATGAC 
    CTGTGGGTGG ATGGAGAAAA GATAATGTCA GCCGAAGAAC CTCCTGAGGT 
    CACGAAAGCT CGCAATGACA ACACATATGG AACAAATTTC CCCGATTCCC 
    CTGAACCAAT ATATGGCACA CAGTATCTGC CAAGAAAGTT CAAGATTGCT 
    GTCACTGTCG CTGGAGATAA CTCTGTTGAT ATTCTGACCA ATGACATCGG 
    TGTTGTTGTT GTTTCAGATA GTGCAGGAGA GCCTGTTGGC TTCAACATTT 
    ATGTTGGTGG TGGCATGGGT AGGACACACC GAGTGGAGAC CACATTCCCT 
    CGATTGGCTG ATCCACTGGG TTATGTTCCT AAGGAAGATA TATTGTATGC 
    TATAAAAGCA ATAGTCGTCA CACAGAGGGA AAATGGGAGA AGGGATGACC 
    GCCGATATAG CAGGATGAAG TATCTGATTG ATAACTGGGG AATTGAGAAG 
    TTTCGGGCTG AAGTCGAAAA ATACTATGGA AAGAAGTTTG AAGATTCTCG 
    TCCTTTGCCC GAATGGCAGT TCAACAGCTA CCTAGGATGG CAGGAACAGG 
    GTGATGGAAA ATTATTCTAC GGAGTGCATG TTGATAATGG TCGTGTCGCA 
    GGGCAAGCAA AGAAAACTCT ACGAGAGATT ATTGAGAAGT ACAATTTGGA 
    AGTTAGCATT ACTCCAAACC AGAATCTTAT CTTATGTGGG ATTGATCAAG 
    CATGGAAAGA TCCCATCACA GCAGCTCTTG CTCAATCTGG CCTGCTGGAA 
    CCAAAGGATG TTGATCCCCT GAATATTACT TCCATGGCAT GTCCTGCCTT 
    ACCACTGTGC CCTCTAGCAC AAACAGAAGC TGAACGAGGG ATTCTGCCGA 
    TTCTTAAACG AATTAGAGCA GTTTTTGATA AGGTTGGCAT CAAGGACCAT 
    GAGTCGGTAG TGGTGAGGAT AACAGGCTGC CCTAATGGAT GCGCTAGACC 
    ATATATGGCA GAGGTTGGCT TTGTTGGTGA TGGCCCAAAC AGTTACCAGA 
    TATGGCTTGG AGGAACACCA AACCAGAGTA CCCTAGCTGA AACCTTTATG 
    AATAAAGTGA AGCTTCAAGA TATTGAGAAG GTTTTGGAAC CATTGTTTTC 
    CTATTGGAAC AGCACACGTC AGGAAGGTGA ATCTTTTGGT AGCTTCACAC 
    GCCGGACGGG ATTTGACAAA TTGAAAGAGG TAGTGAACAA GTGGGCAGAG 
    TCAGCATCAG CTGCATGATG GACTGCTTTC GCTGAACAAG TTGATAACAA 
    TTCTGACCAC GGGTCCAATG CGGGCATCGT CAAGGGCTCT CAACATAACT 
    ATGTGAGCAT TGCAGGAGAA AATTTTGTCA ATTTCGTTGA CAAGATTGAG 
    GACTCGCCGA CTCGGGTTTG GAATCGTTCG TTCAGGTAAT TAATCAAAAT 
    TTTTCGTGTA CTCTGGTTTG AGAAAAAAAA ATGTGCTTAT GAGAAAACAA 
    AAGGAACCCT GGCTGTTTAC TTTGGAATAA ATTGCTTGGA AAGTGTACTG 
    AATAAATTTT TCCATTGTGG TGTTTGTTTT TTTTTC

    Gene models with high sequence identity

    1. AT5G04590.1 [+] show detail - sulfite reductase
      E-value: 0; Score: 880.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 0
    PatternScan Glycoside hydrolase, family 22, conserved site 0
    HMMTigr Sulphite reductase, ferredoxin dependent 0
    Gene3D no description 6e-63
    Gene3D no description 5.2e-35
    superfamily Sulfite reductase hemoprotein (SiRHP), domain 1e-56
    superfamily Sulfite reductase hemoprotein (SiRHP), domain 4.6e-32
    superfamily Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 7.9e-20
    superfamily Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 1.7e-13
    FPrintScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 8.3e-08
    FPrintScan Nitrite/sulphite reductase iron-sulphur/siroheam-binding site 8.3e-08
    HMMPfam Nitrite/sulphite reductase 4Fe-4S domain 1.8e-48
    HMMPfam Nitrite/sulphite reductase 4Fe-4S domain 4.9e-09
    HMMPfam Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 8.1e-15
    HMMPfam Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like 4.1e-14

    See the detailed result >

    AT5G04590.1

    Model type
    Protein coding
    Short Description
    sulfite reductase
    Curator Summary
    A.thaliana gene encoding sulfite reductase.
    Computational Description
    sulfite reductase (SIR); FUNCTIONS IN: sulfite reductase activity, sulfite reductase (ferredoxin) activity, copper ion binding; INVOLVED IN: sulfate reduction, response to salt stress, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphite reductase, ferredoxin dependent (InterPro:IPR011787), Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (InterPro:IPR006066), Nitrite/sulphite reductase 4Fe-4S domain (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: nitrite reductase 1 (TAIR:AT2G15620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR