K17835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17835

Determination of introduced cDNA(s)

J023006K06 - Rice Full-length cDNAs - Original: J023006K06

full reading [+] show sequence

GAGATAGCGC ACGCCACCTC CCCTCCCCTC CCCTCCCATG GCAACGCCAC 
CACCGCCACC GCCTTCGCCT CGTCGCCTCC GCCGCTAGCC GTTACCCCCC 
CACCACCGGC GCCCCCTCAC CTTCTCCCCA ATGTCGACGG CGGCGCCCGC 
ATCCGCTACG GCGGCTGCGA GCCTCTTCCT CCGCCGGAGT CTCTCCTCCT 
CCTCCCCTCG CCACGTCTTC CTGCCTCATT GGGTTGCCCC CATTGTCGTC 
GCGCGCCCCG CTAGGTTATC TGCGGTGCCG GCGAAGCGCG GTGGAGGTGG 
TGTTGTTGCG GCTGCATCGG CGGCGGCGGG GAGCGCGCAG TTTGGCGCCG 
GGGACAGTGA GAATCCATAC GAGATTTTGG GGATCAGTCC ACTTGATGGG 
TTCGACCAGG TGAAGATGGC CTATAAGCGG AGGCGAAAGG ATGCCGAGAG 
CAACAAAGAT GCCGAGCACC TGTTCAAGTT AGAGAGGGCA TACGATATGG 
TCATGATGGA GCAGCTTCAG AACCGGAAGA ATGGGGTGGC ATATGGATCA 
ATCCAGGTGT CAAAGGACAT TAAATAATGC TGATAATCAA CCAGTGGTTC 
CTTGGGGGCC TAGATACTCA AGATCCACTG GGAAGGACCT GCGCATTAAT 
ATGGCAATAT CAGCAACATT TATCATGTAT ATATCTACCA TGGGCCATGC 
AGACTGGAAG CCCATGCAGT TTTTGTGTTT TGCCTATTTC TATCGAATAC 
TTGACAAACT GAAGGCTACC GAGTCAGCTA GCACTCCTAT ATACAATGAG 
TATGGTGAGG TTGAAGGTCG TGGCATACAC ATGGCAAAAC GAGTACTCCG 
TAGTTTGGGT TTGGTACTTG GATCAATACT TGCTGTATCC CTGGGCTACA 
CTGGGCTAGC CAATTTTTCT CAGTTTCTTG GGCAGTATAT TCCATCTGTT 
GTTTATAACT TCCAGGAATT GATTGTGACT ACAGCTTCAT CTGTTTTGCT 
TTGCATATTG GCGTCGTACT ATCGATAGCA ACTTGTGTAA TTGTGTTGGA 
TCACCCCTTG GCATTGCAAT CTTGATAAAC CTGTCTTCAT GAGGGCCATG 
GTCGATAACT TGAGCCTATT CTGCTATGGA ATATGAGAGC CCATCAACTA 
TATAAGTGCA CTGTTCTTGC ATGTTTTACA TCGTTCTTAC ATCTGGAAAA 
TTTTGCAGCT ACTGATAAGA TGTTCTATCC AATGTTTTGA AACTGAAATT 
TAGCATGCAA GAGACAGACA GCTAACAAAG CAATGTGTCA CATGAAACCT 
GACGATGCTG AAAATCTAGT TCTAGTGAGT TGTTCCAGCA AAAAGTTAAC 
TGCAATTTTC CTAGAAGTTT CCTTGAGTTT GCAATCTGCT TGCAAGTTCC 
TTGTATATTT ACTGAACAAT TACTCTGTGT TGGTGAGTTA TGAATTACAA 
CGTCCTTATG G

Gene models with high sequence identity

AT1G08640.1 [+] show detail - Chloroplast J-like domain 1
E-value: 5e-62; Score: 85.50

InterPro Scan Digest

See the detailed result >

AT1G08640.1

Model type: Protein coding
Short Description: Chloroplast J-like domain 1
Computational Description: Chloroplast J-like domain 1 (CJD1); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 82 Blast hits to 80 proteins in 30 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR