K17837

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17837

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17837

Determination of introduced cDNA(s)

J013096B20 - Rice Full-length cDNAs - Original: J013096B20

full reading [+] show sequence

GAATTGCTTC CCTCTTATCT CTCGATTGAT CCACGAACAG TGACACCGCC 
GCGCACAGCG AATCCGCCAT GGCCGCCAAG CAGAGCCTCT ACCCCGAGGT 
GAACCAGTCC CACCCCGACC TCAACACCGC CTTCCTCGCC AACCCCAACC 
GCGCCGCCAC TGCCAGCCCT GGCGGCTCGC TCTACCCCTC CGTCGACCCG 
CAGCAGCTCG CCGAGAACCT CTTCCCCGAC GCCGCCGATG ACGCCGCGCC 
GCCGCCTCCC ACCACCGAGG AGGCCCTCGT CGCGGTTCCG GGCGCGCAGC 
TCCACCTCGT CGACCCCGAC CGCAGCATGG ACCTCGGTGC CGGCACGCTC 
TCCGTCGTCC GCCTCCGCCA GGGGGACCAC TCCGTCGCCG TCCTCGCGAG 
GCTCGTCCCG GAGAAGCGCA GCCAGCGCCG CGGCGGCCTC TTCGGCTTCT 
TGAGCGGCGG CGGGAAGGCC GGCGACGGCG CCGCGCAGGA GCCCGTCCAG 
TGGCCGCTCA CCCGCGACGT CGCCGCCGTC AAGCTCGACA CCGCGCACTA 
CTTCTTCTCG CTCCACGTCC CGCACACAGA TCACGAGGAT GACGACGCCG 
AGGGGGCCGA GGCGGAGAAG GACGCGGACG GGGAGGCGGC GCTGAGCTAC 
GGGCTCACGG TCGCCAGCAA GGGGCAGGAG GCGGTCTTGG CCCAGCTGGA 
CAAGGTACTG GAGGAGTACA CCACCTTCTC CGTGAAGCAA GTGGAGCCGG 
CGGCGAAGGA GAAGTCGGAG GTGATGGACA CGAAGGCGGT GACGGAGATC 
ACGCCGGAGG AGGCCGTTGG GGACAAGAAG GAGGTGGTGG AGGAGCAATC 
AGCGGCGTTC TGGACGACGA TCGCGCCGAA CGTGGACGAC TACAGCTCGT 
CGGTGGCGAG GCTGATCGCG CGGGGCTCGG GGCAGCTGGT GAGGGGCATC 
ATCTGGTGCG GGGACATCAC AGCGGAGGGC CTCCGGTGTG GGGAGGCGGT 
GGTGAAGAAG AGCGTGGGGC CGAGTGGGAA GCCGTCACAG GTGAAGCCGA 
GCACTATCAG GAGGATGAAG AGGGCTAGAA GGGTTACGAA GATGTCCAAC 
AGGGTAGCAA ATTCAATCCT CTCTGGTGTT CTAAAGGTCT CTGGGTTTGT 
TACCAGCACT GTGCTGAACT CGAAACCTGC CCAGAAATTC TTTAAGTTGA 
TGCTGGGCGA AGTTATTCTT GCTTCACTCG ATGGATTTGG GAAAGTATGG 
GATGCTGTAG AGGTGTCTGG AAAGAACGTG ATGCGAACGT CGTCGGTTGT 
GACAACTTCT GTTGTAACAC ATAGATACGG AGATCAAGCT GGACAGGTCA 
CACAGGATTA CCTTCACGCC TCTGGAAACG CTCTTGGAGT CGCATGGGCT 
GTCTTCAAAA TTCGGAAAGC TCTCGACCCA AAGGGCAATC TGAAGAAGTC 
GTCTCTGGCG AGCGCTGCTG CCCATGCTGT AGCTAAAGAA TCGATATCTC 
GGCAAAGAAG GAAGTGAGAC AACACGGTCG ATGGTGGAAC TCGCTGTTAC 
TCTCTAATAC GGTGTACTAG CTTCAATAGA AATGCTCTTT TGTGAACTTG 
GCGGCTATAG CAGATTTTGT TGGATGTGTC GCTTGTAACT TGTAAGGCGT 
GTGACTGTTG CCGTGATGGT TTTGATGTTT GTTTTGGTTT TTGGATGTTT 
GCGAATTGCG ATGATGTACT GATTTGTAAC CTGTCGAATT ACTATATGTG 
TATACATG

Gene models with high sequence identity

AT2G17840.1 [+] show detail - Senescence/dehydration-associated protein-related
E-value: 2e-98; Score: 356.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SUBFAMILY NOT NAMED	1e-162
HMMPanther	FAMILY NOT NAMED	1e-162
HMMPfam	Senescence/spartin-associated	4e-165

See the detailed result >

AT2G17840.1

Model type: Protein coding
Short Description: Senescence/dehydration-associated protein-related
Curator Summary: Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.
Computational Description: EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR