K17838

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17838

Determination of introduced cDNA(s)

  • J013108O03 - Rice Full-length cDNAs - Original: J013108O03

    full reading [+] show sequence

    Nucleotide sequence: J013108O03 - full reading 
    GCTCCTTCCC TTTCCTCCTC CATTCCAACC TTCCAACCCA ACAACCTCAA 
    CCCTCCTCCC TCAGTATCCC CCCAAGAACG CGAGGAGCCG AGTCCGTACT 
    AGGCCCAGGT CATCTTTTGT TGTAGAGGCG ATGCAGACGG CGGCGGCGGC 
    GGCGGTGGCG TGGGCGCCGA GCCCATCGCC GTCCACCTCC ACCTCATCGC 
    CGCCCCCCTT CAAGGTGGGG ATCGCGTCGC CGTGTGGGAC GGCTGCTCAC 
    GCCTCCTCCG CGCCGAGGTT GGTTGCTGCG GCCACTCACC GGGGGCGGCG 
    GCGGCAGCAG CAAGTGGTTA AGGCTATTGC CAACCCAGAC CCAGCAGTTG 
    AGCTGCCATT GACAGCTGAA AATGTTGAGA TTGTATTGGA TGAAGTTCGA 
    CCATACCTTA TGGCAGACGG AGGAAATGTT GCATTGCATG AAATTGATGG 
    GAATGTGGTG AGGTTGAAGC TGCAAGGAGC ATGTGGATCA TGCCCAGCTT 
    CAGTAACAAC AATGAAGATG GGTATTGAGC GACGCTTGAT GGAGAAAATT 
    CCTGAAATTG TTGCTGTCGA GCCCATTGCT GATGAGGAGA CTGGCCTTGA 
    GTTGAACCAG GAGAATATTG AAAAGGTACT CGATGAGATT AGGCCATACC 
    TTTCTGGCAC AGGAGGTGGT GAGCTTGAAT TCGTTGCGAT CGAGGAACCT 
    ATCGTCAAGG TTAGGCTTAC GGGCCCAGCT GCTGGTGTGA TGACAGTTCG 
    CGTTGCCCTA ACTCAGAAGC TCAGAGAAAA GATACCTAAA ATCGCAGCTG 
    TCCAGCTATT GTCGTAAGCC TGAAAACATT TAGAAAACAA CCCCTGCAAT 
    GTAAATGTGC CGCTACAATA ATCGCCAGGA AAGATTGTAA TGGGCTTAAA 
    GCTTTGTAAC CTGTTACTCT ATTCTACTTG AACTACGAAT AGTGATCATC 
    AATATGAAAT GTTGTAAGGG TGTTCCTACT GGATTTATTT ACAAAAGGTT 
    TTGGGCTTC

    Gene models with high sequence identity

    1. AT5G49940.1 [+] show detail - NIFU-like protein 2
      E-value: 3e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 7.4e-25
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 0.0000000038
    HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 1.4e-53
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 2e-31
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 1e-27

    See the detailed result >

    AT5G49940.1

    Model type
    Protein coding
    Short Description
    NIFU-like protein 2
    Curator Summary
    Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
    Computational Description
    NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR