K17841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17841

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Original: K17841

Determination of introduced cDNA(s)

  • J013159B16 - Rice Full-length cDNAs - Original: J013159B16

    full reading [+] show sequence

    Nucleotide sequence: J013159B16 - full reading 
    GGTAAAATTT CCGCACTGTT GTAGACAGCA TATCTCTCTC GTTCCCCTTT 
    TGCTCTCCGA AAACCCTAAC CCCTCGCCGC CGATCCGGCC CTCCTCCGCC 
    GCTGGCCGCC ATGCCGGACG TGCAGCCGCT CGTCAGCGAG TTCGTCCTCA 
    AGCTCAAGCG CCGCAAGGTG GAGGGGTCCC ATGCCGTGGC GCGGCAGACG 
    GCGTCGGAGA GCAGCTCATC GCCGCCAACC CCATCGAACT TGCTGTTGGA 
    AACATTGTGA GACGTGTTTT GCATATAATA AAAGAAGAGG ATATATCTTC 
    TACAGCAGTT GGTATTGAAG GCCTTTCTGT CACCGCTGAG AGCGATGATG 
    AATATGACAG TGGAAATGAT GATCACCCTA CCTTATCTGC TGCTGTCCTT 
    GCTGCCCATG CTAGAAATGC CCTTCGGGCA CCTTCATTGC AGACACTTCT 
    GGAAGATATT CCTGTGAGCA CTGCGCTTTC ACGTTCCGCA TCGTCGGCTG 
    GGGACTCTGA TGGAAAATCT GGAGATAAGA GCTCAAAATC TCGGAAACTC 
    AAGCATGATG TTATTGCAGC CATTGGTGAT CTAATTGATG AAATTGATAC 
    GTGCTATGAC CAGATCTCTG AGCAAGCCGT GGAACATATT CACCAGAATG 
    AAGTAATTCT AACTCTAGGC CGCTCTAGAA CGGTGAAAGA GTTTCTGTAT 
    GCTGCCAAAG AGAAAAAGCG ATCTTTTCGT GTATTTGTTG CTGAAGGTGC 
    TCCCAGATAT AAGGGTCATG TTCTTGCAAA AGAGCTGGTT GAGAAGGGTG 
    TACAAACTAC TGTTATAACA GACTCTGCAG TTTTTGCTAT GATCTCCCGT 
    GTTAACATGG TCATAGTTGG AGCCCATGCA ATTATGGCAA ATGGTGGAGT 
    TATTGCACCA GTAGGAATGA ACATGGTTGC TCTTGCTGCT CAAAGGCATG 
    CTGTTCCCTT TGTTGTGGTT GCTGGCAGTC ACAAGGTTGA TTTCTGTATA 
    CTGTGCATTT AATTATGACA TCGATAACCA GAGGTTGCTT TCTGAGCAAT 
    TAAATACAAC ATATGTTCTA TTTCTTGAAG GCATAGATTA TGTCATGCTG 
    TCATTAGCCT GATATTATCA TTCTGTGCAT CTTATGTTAT TAACCCAAAA 
    TCATTTTTCT TTAGCTACTA TTATTCCCAC TTTATTATTT TTAGTACTTC 
    TTGTTTTGGC TCACATGGTT CGATTTCGGT TCATCTCCAG CCCACCCCAA 
    CTTGGGACTA AAGGCTTAAG TTGTTATTGC TGTTGTTGTC ATGTTATTAC 
    ACTTGTCCCT ATGTAGTATT AGCTGGACAA AGTAGGCTCA ATTGGTCATG 
    ATATAATGCA ATCATTATAC GATAGGATAC CAATTATGCT TTAACCAGAT 
    ATTTCTACTT TATTAAATTC AACACAAAAC ATTTGTTATC ACCTGCTGCT 
    CCTCACAAAT CCCCTAGTCA CCTCTGCCTT AGACTCAAAG TATATGCTAC 
    CAAGTCATTC ATTCTTGTTG TTTATTTTAG TTCCGTGACA AGATACCTTG 
    TCCTTGTGAG GATTAGCCCT GTGGCCTCTG AGTTGAAAAT AGTGACCAGC 
    ATTTGACTGA GATCCCACTT ATATGCTCAA GAGAAGTCAT TTCTGCCTTC 
    GAAGCTATAG ATATTTTCTT AAGCGATTAT TCATTCATAA CAAGAGCTGT 
    TATTTGATGT TTGAACATTT GGGTCACCTG GTATCACTAA TAATGATTTG 
    AAACACTATA TCTTTGGGTA GAAACTTAAT AATATTTCTT CATTCACATC 
    GCAGCTATGT CCTTTGTATC CACACAACCC AGAGGTTTTA CTGAATGAAC 
    TTAAATCACC ATCTGATCTG CTCGACTTTG GCGAGTTCTC AAGTTGCATG 
    AACTTCAGTA CTCAGGATGG CACTCCTCTT CTGAATGTTG TCAATCCAAC 
    GTTTGACTAT GTGCCACCAA AGCTTGTGAG CCTTTTCATC ACTGATACGG 
    GAGGGCACAG TCCATCATAC ATGTACCGCC TTATCGCTGA GTATTACTCA 
    GCTGATGATT TGGTAGTGCG GCGGAAGTCG ACATCTTCAT AGAACAAAAA 
    AGGCGCACTA GAGTACTTTA GTATGTTGGC ATTCTGAAGG TACAATCTAG 
    GATGTACACA AATGCTGTTA GAGAGGTTGC TGTCCTCAAT GGAATCAGCT 
    GTTTTGATCT GGAAGTTGAA TTCTGTAATT ATTACCACCG AACCGCAACC 
    AAGCATTTTG AGTGTAGACT GTTTGAGGCT ATGGGCGTGA CGGATGCCTG 
    ATTGGAACAT GAATTGTATA AACTAGAGAA GGAAGCTACA TATGTGATGC 
    AGGGTGTAAA GTGTGGATGT TTTCGAGTCC GTGCATCCTG TGATCTGCCG 
    AGTCCAAATT TTGTC

    Gene models with high sequence identity

    1. AT3G07300.2 [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
      E-value: 2e-87; Score: 40.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Initiation factor 2B related 5.7e-51
    HMMPfam Initiation factor 2B related 4.2e-07
    Gene3D no description 7e-40
    Gene3D no description 0.00027
    superfamily NagB/RpiA/CoA transferase-like 2.1e-52
    superfamily NagB/RpiA/CoA transferase-like 6e-15
    HMMPanther TRANSLATION INITIATION FACTOR EIF-2B BETA SUB 3.1e-83
    HMMPanther Initiation factor 2B related 3.1e-83
    HMMPanther TRANSLATION INITIATION FACTOR EIF-2B BETA SUB 7.5e-31
    HMMPanther Initiation factor 2B related 7.5e-31

    See the detailed result >

    AT3G07300.2

    Model type
    Protein coding
    Short Description
    NagB/RpiA/CoA transferase-like superfamily protein
    Computational Description
    NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR