K17846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17846

Determination of introduced cDNA(s)

  • J023117K20 - Rice Full-length cDNAs - Original: J023117K20

    full reading [+] show sequence

    Nucleotide sequence: J023117K20 - full reading
    GGTCTTCCTC TGAACCCTGA ACCAATCCCG AACTCTGAAC TCTGAAGGCT 
    GCAGAGACAG GCAGAGAGAT ATGAGGGAGA TAATAAGCAT CCACATAGGG
    CAGGCGGGCA TCCAGGTGGG GAATTCTTGC TGGGAACTAT ACTGCCTCGA
    GCATGGCATC CAGCCGGACG GCCTCATGCC CAGCGACACA ACTCCTGGAA
    TTGCAAGGGA TGCATTCAAC ACGTTCTTCA GCGAGACGAG TTCAGGCAAG
    CACGTCCCAA GGGCGTTGTT CGTCGACCTG GAGCCCACGG TGATTGATGA
    GGTGAAGACC GGGCCATACC GCCAGCTCTT CCACCCAGAG CAGCTCATCT
    CCTACAAGGA AGACGCTGCT AACAACTTTG CTCGTGGGCA CTACACAGTT
    GGAAGAGAGG TGGTAGATCT TTGCCTTGAT CGACTAAGAA AACTGGCAGA
    TAACTGCACT GGTCTCCAAG GTTTTCTGGT TTTCAATGCT GTTGGTGGAG
    GAACCGGCTC TGGACTTGGT TCATTACTTT TGGAGCGCCT ATCAGTAGAT
    TACGGTAGGA AGTCGAAGCT CGGGTTCACA ATATATCCTT CACCACAGAT
    CTCAACGGCC GTGGTGGAGC CTTACAACAG CGTGCTCTCG ACCCACTCCC
    TGATCGAGCA CACCGACGTC GTCGTCCTCC TGGACAACGA GGCCATCTAC
    GACATCTGCA AGAGGTCGCT GGACATCGAG CGGCCGACGT ACACCAACCT
    GAACAGGCTC ATCTCCCAGG TGATCTCGTC GCTGACCACG TCGCTGCGGT
    TCGACGGCGC CATCAACGTC GACATCACCG AGTTCCAGAC CAACCTGGTG
    CCGTACCCGA GGATCCACTT CATGCTGTCC TCCTACGCCC CCATCATCTC
    CGTCGAGAAG GCGTTCCACG AGCAGCACTC CGTCCCGGAG ATCACCAACT
    CCGTCTTCGA GCCCGCCAGC GTCATGGCCA AGTGCGACCC CAGGCACGGC
    AAGTACATGG CCTGCTGCCT GATGTACCGC GGCGACGTCG TCCCCAAGGA
    CGTCAACGCC GCCGTCCACT CCATCAAGAC CAGGAGGACT GTGCAGTTCG
    TCGACTGGTG TCCGACAGGG TTCAAGTGCG GGATAAACTA CCAGCCGCCG
    ACGGCGGTGC CGGGAGGGGA CCTGGCGAAG GTGAGGAGGG CGGTGTGCAT
    GATCAGCAAC AACACGGCGG TGGCGGAGGT GTTCTCGCGG ATCGACCGCA
    AGTTCGACCT CATGTACGCC AAGCGCGCGT TCGTGCACTG GTACGTGGGC
    GAAGGGATGG AGGAAGGGGA GTTCTCCGAG GCCAGGGAGG ACCTCGCCGC
    GCTGGAGAAG GACTACGAGG AGGTCGGCGC CGAAGTCGAG GACGACGACG
    AGGAACAGGG CGAGTACTGA TCGGGCTAGC CTGCTAGGTG AATCTAGCAC
    GGTAGATAAA CCGCAAGTTT GTAAGGTCGG TGGAAGGGGG TCTCTCGGTT
    TACATGGACT CTTGTGACTT TGTGGTGTGA GAGTGGGTTT TGTTGTACTT
    GCATCACAAA AAATAAAAGA ATTCGTCAGA AATC

    Gene models with high sequence identity

    1. AT5G19780.1 [+] show detail - tubulin alpha-5
      E-value: 0; Score: 786.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tubulin/FtsZ, GTPase domain 2.2e-118
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 4.6e-48
    Gene3D no description 2.8e-21
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Alpha tubulin 4.2e-109
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    FPrintScan Tubulin 4e-88
    HMMSmart no description 5.5e-69
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.4e-49
    superfamily Tubulin/FtsZ, N-terminal 7.3e-102
    superfamily Tubulin/FtsZ, C-terminal 9.4e-82
    HMMPanther Alpha tubulin 9.2e-230
    HMMPanther Tubulin 9.2e-230
    HMMPfam Tubulin/FtsZ, GTPase domain 2.4e-70
    HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 4.1e-50
    Coil coiled-coil 0
    PatternScan Tubulin, conserved site 0

    See the detailed result >

    AT5G19780.1

    Model type
    Protein coding
    Short Description
    tubulin alpha-5
    Curator Summary
    Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.
    Computational Description
    tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR