K17902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17902

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17902

Determination of introduced cDNA(s)

  • J013088O16 - Rice Full-length cDNAs - Original: J013088O16

    full reading [+] show sequence

    Nucleotide sequence: J013088O16 - full reading 
    GGCCAAAGCA AAAATCCTCT CCCATCTTCC ATCTCTCTTT CCCTAGGACG 
    CGCAGCGCTG TTTATTCCTC TCCGCTCCCC TTGCTTCTCG CGCACACTAA 
    CCAATCCGAG CATCTCGCCT CGCCCCGCCC CGCCCCGATC GATCGACTCG 
    AGCGCCACCC CACGCCGCCG CCCCCGCGCC ATTGGCCCCA GCCGCCGGGA 
    GGCATTCGTC TGCGCTGCCC CGCGGCGGTG GCGGTGACGG TGGAGGTGGA 
    GGCGGTGTGG CATGATCGAT AGAGGAGTCG GGAGAGGCGG CGGAGGAGGA 
    GGGGGAGGAA GAGGCGGTGG AGATCGCTAG GAGTGGTGGT GGTGGTGGGA 
    GGAGGAGGCG ATGAAGGCGA CGCCCCCGCC GGCGAAGAGG CGGAGGGGCC 
    CGCGGCTGGC GGTGCTGGCG CTCGTCTTCT GCTCGCTGCT CGTGCCGATC 
    GCCTTCCTCT TCAACCGCTT CCCTGCCGTG TATGTGACGG ATGAGCGCCC 
    CCAACAGGAG ATTGATTTGC CTTCATTCGG ACGCATGGGG TTGGAAAGGG 
    GCGGTGGAGT AACCGTAGTG AAGCCGGAAG ATGGCAGTGG TGCTAACGCA 
    GAGACAAAGG ATACACCTGA GATGATTCAC AGGGGCGGTA TAAACTCACA 
    TCACCATAGT GATAATGTCC CTTCCAAAGT TAGTGCTAAC CCAAAAGTCC 
    CCCCTCCACC AAAAATTGAA CCACTGAAGC CAAAGGCAAA GTCAGTACCA 
    GTTCCAGTTC AACGTACAGA AGTTATTAGT GGCAATAACA TGAAACCTGC 
    CAAAGTTCAA AATGCGGACG ATGTGGAAAA GGCTAAGGCT TGTCAGCTTG 
    AATTTGGGAG TTACTGCCTC TGGTCCATAG AGCACAAAGA AGTTATGAAA 
    GACACCATTG TGAAAAGACT AAAAGATCAG CTATTTGTAG CTCGCTCGTA 
    CTACCCAAGC ATTGCCAAAC TAAAAGGAAA GGAGGCACTG ACTCGTGGGT 
    TGAAGCAAAA TATTCAAGAA CATGAGAGGG TTCTCAGTGA GTCCATTGTT 
    GATGCTGATC TACCATCGTT TATCAAAAGC AAGATAGAGA AGATGGACCA 
    AACAATAGGA AGAGCTAAAG CATGCACTGT TGATTGTAGC AACGTCGACA 
    GAAAGCTTCG CCAAATACTT CATATGACAG AGGATGAAGC TCATTTTCAT 
    ATGAAGCAGA GTGCATATCT GTACAATCTT GGTGTTCACA CGATGCCCAA 
    AAGTCATCAT TGCCTTAACA TGAGGTTGAC GGTAGAATAT TTTAAGTCCG 
    CTCCATTGGA TTCAGATGAC TCTGCTGTGC ATAAGTTTAA TGTTCCAGAC 
    CATAGGCACT ATGTCATATT ATCTAAAAAT GTACTTGCAG CTTCTGTTGT 
    CATCAACTCA ACTGTTAGTA ATTCTGAGGA GACCGAAAAT GTAGTATTTC 
    ATATATTAAC TGACGCTCAA AATTTCTATG CCATGAAGCA CTGGTTTGGA 
    AGGAACTCCT ACAGGGAGTC AGCTGTTCAT GTCATAAACT ATGAGCATAT 
    TATTTTGGAG AATTTGCCCG AGTTCAGCTC CCAGCAATTA TATTTACCCG 
    AAGAATTTCG TGTTTTCATC AGTAATCTTG AACGACCTAG TGAGAAAACC 
    AGAATGGAAT ATTTATCAGT GTTCAGTCAC TCACATTTCT TCATCCCAGA 
    AATATTAAAA GATTTAAAGA AGGTGATTGT GTTGGATGAT GATGTGGTTG 
    TTCAACGTGA TCTCTCTTTC TTGTGGAATA TTGATATGGG AGATAAGGTC 
    AATGGTGCTG TCAAGTTTTG TGGTCTGAGA ATGGGACAAC TAAGAAACCT 
    TCTGGGTAAA GCAACATATG ATCCGCAGTC GTGTGCTTGG ATGTCTGGGG 
    TGAATGTGAT TGATTTGGAG AAATGGAGGG AGCATAATGT CACAGAGAAT 
    TACCTTCAAC TACTGAAAAA GTTCCAACAC AATGATGATG AAGCTTCAGT 
    GCGAGCTGCA GCTTTGCCAA TAAGCTTGCT TGCCTTTGAA CATCTTATAT 
    ATCCTCTCGA TGAAAGATTG ACTATATCTG GGCTTGGATA TGACTATGCC 
    ATCAAAGAGG AACTTGTCCG GAATTCTGTA TCATTGCATT ATAACGGTAA 
    TATGAAGCCT TGGCTTGAGT TAGGTATACC GGACTACAGG AAGTACTGGA 
    AGAGGTTTCT TACACGAGAT GAACGATTCA TGGATGAGTG CAATGTAAGT 
    CCATAATGCA CTTAAACCTG GGAAACAAAA TATCTGACGG TAGATTGCTA 
    CGTCTGCTGC TGTATTATAT ACCTAGAGGG GACGAGCACT TCCATTGAGG 
    AAAAATGGGG CCAGGAAAGC AGTTATTAGC CATCAATTTT GACAGAGTAG 
    ATCCAGCACC ATCTGTTCAT TGAATTAGTG AGCTTGATGG ATGGTTTTTC 
    TACAGTTAGA GAAATTAGTC TTAAGCTGAA GGATAATGCA GTAGACAATG 
    ATGATGAGTG TTAGTGAGGC TTCAGGTAAA GGGAGCATCA CTCTCACCTT 
    CTAGAGTACG GGACAGAACG ATCGATCGGT GGTGGGCTGT GGCACCTTTA 
    TTCAAATTGG TACCTTGCGC CTCATCGATG CAGGTTAATT CTTTTCTTTG 
    TTGAATTTTT TTGACCCCCT TGTTTTGTCC TGTCAATAAG GGCATACACA 
    GGCTAAATTC AAATTCTTTG TTCTTAGTTG CACATTGATT GTTCATCATT 
    TTTGTGTCGG TGGAAAGTAT ATTTTGTTGT CAGAAAACCA TCAGTTACAC 
    AACGAGATTG GCAGCTGTTT GG

    Gene models with high sequence identity

    1. AT2G38650.2 [+] show detail - galacturonosyltransferase 7
      E-value: 2e-141; Score: 500.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 2e-52
    HMMPfam Glycosyl transferase, family 8 2e-39
    superfamily Nucleotide-diphospho-sugar transferases 1.6e-49

    See the detailed result >

    AT2G38650.2

    Model type
    Protein coding
    Short Description
    galacturonosyltransferase 7
    Computational Description
    galacturonosyltransferase 7 (GAUT7); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 4 (TAIR:AT5G47780.1).
    Link
    InterPro Scan - TAIR