K17906

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17906

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17906

Determination of introduced cDNA(s)

  • J023099M11 - Rice Full-length cDNAs - Original: J023099M11

    full reading [+] show sequence

    Nucleotide sequence: J023099M11 - full reading
    GATTGCCCTC TGAGTCTCTG AAATCCTGAA GCTTCTTCTT CTTCTTCCTT 
    CCTCCTCTTG CTCTCTTGCT CTTCCTATGC TAGCACTCTC CATGCTCTTC
    TTGCCCTTGT AGCATTGGCT CCTTGGTTTC CATCCATGGA TCCACGCTAA
    ATGCATTGCG AGGCTGCAAA TTGGTAGCAT TCCCTTCCCC GTTGCATCTG
    CTGCAACTAT GTAAGCAGGA GTGTCTGATT TGACACGCCT GAATACAGCT
    TCTCAGATCT TCAGTTTTGT TGTTTGTCTG AGAAAAGGAG AGAGAGAGAG
    GCCTCTTTTG GGTCCAAGAA GAGAAAAATG GAGGAGAGCT TCGTGCCCCT
    CCGTGGCATC AAGAACGACC TCCATGGGAG GCTCCAGTGC TACAAGCAGG
    ATTGGACCGG AGGATTCCGC GCCGGTATCA GGATCCTTGC GCCGACCACC
    TACATATTCT TCGCTTCGGC CATACCGGTG ATATCGTTCG GAGAGCAATT
    GGAGAGGAAC ACTGATGGTG TTCTGACAGC AGTTCAGACA TTGGCATCCA
    CTGCACTTTG TGGCATAATC CACTCCTTTC TTGGAGGGCA GCCTCTGCTG
    ATCCTCGGTG TGGCCGAGCC GACGGTGCTC ATGTACACAT TCATGTTCAA
    CTTTGCCAAG GACAGGCCTG ATCTTGGAAG GAGGCTGTTC CTCGCATGGA
    CCGGTTGGGT TTGTGTCTGG ACAGCAATTT TGCTGTTCTT GCTGGCGATA
    CTAGGCGCGT GCTCGATCAT CAACCGGTTC ACCCGCATCG CGGGTGAGCT
    GTTTGGGCTC CTGATTGCAA TGCTCTTCAT GCAGCAGGCT ATCAAGGGGC
    TTGTTGACGA GTTCCGCATC CCTGAGAGGG AGAACAGAAA GGCATTAGAG
    TTTGTTTCAT CATGGAGGTT CGCCAACGGA ATGTTTGCTA TCGTCTTGTC
    GTTTGGCCTT TTGCTCACTG CACTGCGGAG CAGGAAGGCT CGATCATGGC
    GCTATGGAAC AGGTTGGCTC CGTGGCTTCA TCGCCGACTA TGGTGTCCCA
    CTGATGGTGC TAGTATGGAC AGGAGTTTCC TACATTCCAT ATGGTAGTGT
    TCCAAAAGGA ATTCCACGGC GCCTTTTCAG CCCCAACCCA TGGTCCCCTG
    GTGCATATGA TAATTGGACA GTCATCAGGG ACATGCCAAA TGTGCCACTC
    CTCTACATTA TTGGTGCCTT CATACCAGCA ACGATGATAG CCGTCCTTTA
    CTACTTCGAT CACAGTGTTG CTTCTCAGCT TGCTCAGCAG AAGGAGTTCA
    ATTTGAGGAA GCCCCCATCT TTCCATTATG ATTTGCTTCT CCTGGGTTTC
    CTGACATTAT TGTGTGGCCT TATTGGTATC CCTCCGGCGA ATGGTGTCAT
    TCCACAGTCT CCAATGCATA CGAAGAGTTT GGCTACTCTC AAACATCAAC
    TACTCCGTAA CCGACTAGTA GCCACAGCCC GACAAAGCAT GAGCCAGAAT
    GCGAGCTTGA GCCAGCTGTA TGGCAGCATG CAGGAAGCTT ACCAGCAGAT
    GCAGACACCA CTGATTTACC AGCAACCGTC AGTCAAGGGA TTGAATGAGC
    TCAAGGACTC AACAGTCCAA ATGGCTTCAA GCATGGGCAA CATCGATGCG
    CCAGTTGATG AGACAGTCTT TGACATCGAG AAAGAAATCG ATGACCTGCT
    GCCTATCGAG GTCAAGGAGC

    Gene models with high sequence identity

    1. AT3G62270.1 [+] show detail - HCO3- transporter family
      E-value: 0; Score: 761.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Bicarbonate transporter, C-terminal 1.9e-28
    HMMPfam Bicarbonate transporter, C-terminal 5.6e-18
    HMMPanther ANION EXCHANGE PROTEIN-RELATED 2.8e-225
    HMMPanther Bicarbonate transporter, eukaryotic 2.8e-225

    See the detailed result >

    AT3G62270.1

    Model type
    Protein coding
    Short Description
    HCO3- transporter family
    Computational Description
    HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR