K17906

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17906

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17906

Determination of introduced cDNA(s)

J023099M11 - Rice Full-length cDNAs - Original: J023099M11

full reading [+] show sequence

GATTGCCCTC TGAGTCTCTG AAATCCTGAA GCTTCTTCTT CTTCTTCCTT 
CCTCCTCTTG CTCTCTTGCT CTTCCTATGC TAGCACTCTC CATGCTCTTC 
TTGCCCTTGT AGCATTGGCT CCTTGGTTTC CATCCATGGA TCCACGCTAA 
ATGCATTGCG AGGCTGCAAA TTGGTAGCAT TCCCTTCCCC GTTGCATCTG 
CTGCAACTAT GTAAGCAGGA GTGTCTGATT TGACACGCCT GAATACAGCT 
TCTCAGATCT TCAGTTTTGT TGTTTGTCTG AGAAAAGGAG AGAGAGAGAG 
GCCTCTTTTG GGTCCAAGAA GAGAAAAATG GAGGAGAGCT TCGTGCCCCT 
CCGTGGCATC AAGAACGACC TCCATGGGAG GCTCCAGTGC TACAAGCAGG 
ATTGGACCGG AGGATTCCGC GCCGGTATCA GGATCCTTGC GCCGACCACC 
TACATATTCT TCGCTTCGGC CATACCGGTG ATATCGTTCG GAGAGCAATT 
GGAGAGGAAC ACTGATGGTG TTCTGACAGC AGTTCAGACA TTGGCATCCA 
CTGCACTTTG TGGCATAATC CACTCCTTTC TTGGAGGGCA GCCTCTGCTG 
ATCCTCGGTG TGGCCGAGCC GACGGTGCTC ATGTACACAT TCATGTTCAA 
CTTTGCCAAG GACAGGCCTG ATCTTGGAAG GAGGCTGTTC CTCGCATGGA 
CCGGTTGGGT TTGTGTCTGG ACAGCAATTT TGCTGTTCTT GCTGGCGATA 
CTAGGCGCGT GCTCGATCAT CAACCGGTTC ACCCGCATCG CGGGTGAGCT 
GTTTGGGCTC CTGATTGCAA TGCTCTTCAT GCAGCAGGCT ATCAAGGGGC 
TTGTTGACGA GTTCCGCATC CCTGAGAGGG AGAACAGAAA GGCATTAGAG 
TTTGTTTCAT CATGGAGGTT CGCCAACGGA ATGTTTGCTA TCGTCTTGTC 
GTTTGGCCTT TTGCTCACTG CACTGCGGAG CAGGAAGGCT CGATCATGGC 
GCTATGGAAC AGGTTGGCTC CGTGGCTTCA TCGCCGACTA TGGTGTCCCA 
CTGATGGTGC TAGTATGGAC AGGAGTTTCC TACATTCCAT ATGGTAGTGT 
TCCAAAAGGA ATTCCACGGC GCCTTTTCAG CCCCAACCCA TGGTCCCCTG 
GTGCATATGA TAATTGGACA GTCATCAGGG ACATGCCAAA TGTGCCACTC 
CTCTACATTA TTGGTGCCTT CATACCAGCA ACGATGATAG CCGTCCTTTA 
CTACTTCGAT CACAGTGTTG CTTCTCAGCT TGCTCAGCAG AAGGAGTTCA 
ATTTGAGGAA GCCCCCATCT TTCCATTATG ATTTGCTTCT CCTGGGTTTC 
CTGACATTAT TGTGTGGCCT TATTGGTATC CCTCCGGCGA ATGGTGTCAT 
TCCACAGTCT CCAATGCATA CGAAGAGTTT GGCTACTCTC AAACATCAAC 
TACTCCGTAA CCGACTAGTA GCCACAGCCC GACAAAGCAT GAGCCAGAAT 
GCGAGCTTGA GCCAGCTGTA TGGCAGCATG CAGGAAGCTT ACCAGCAGAT 
GCAGACACCA CTGATTTACC AGCAACCGTC AGTCAAGGGA TTGAATGAGC 
TCAAGGACTC AACAGTCCAA ATGGCTTCAA GCATGGGCAA CATCGATGCG 
CCAGTTGATG AGACAGTCTT TGACATCGAG AAAGAAATCG ATGACCTGCT 
GCCTATCGAG GTCAAGGAGC

Gene models with high sequence identity

AT3G62270.1 [+] show detail - HCO3- transporter family
E-value: 0; Score: 761.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Bicarbonate transporter, C-terminal	1.9e-28
HMMPfam	Bicarbonate transporter, C-terminal	5.6e-18
HMMPanther	ANION EXCHANGE PROTEIN-RELATED	2.8e-225
HMMPanther	Bicarbonate transporter, eukaryotic	2.8e-225

See the detailed result >

AT3G62270.1

Model type: Protein coding
Short Description: HCO3- transporter family
Computational Description: HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR