K17907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17907

Determination of introduced cDNA(s)

J033107O14 - Rice Full-length cDNAs - Original: J033107O14

full reading [+] show sequence

GTGGCCCAAT ACTGCTCCTA CAAAGACACT GCCACATTCC TTCTCCTTCC 
TCCTGCATAC TGTCTCTCTC TCTCTCTCTA TCTGATCAGC TGTTCCGCTT 
CCTCCTCTTC TTCTCTCCCC CAACCCCGTA GCCCTCCCAC CCATCGAGCC 
AGGCGGCGGC GCGACGGCCG GTGGCTAAGG CGGCGGCCGG TGCCAAAATC 
TCGAGCAATC GCGTCGCGCC GTCTGGCCGG CTTGCGACAT CGCTCGCCCG 
AGAGCGTCGT CGTCTTCGAG CTTGTGCCGC GCGGCGCCGT CGCCGCGTGG 
TCCGAGGGCC CCGTGCCACC GCGTGCAGAG GGCAGAGGCC CATCGCCTCC 
TCCTCGAGCC ACCGCGCTGC CGTGTGCCGT CCCCCTTGTC GTCCTCGAGC 
CCCTGCGTCG CCGCCGGCCG CCGGGGCTCC TCCTCCTCGT CCTCCTCGTC 
ATCGACGCCC CAATCGGCAC CGCCTCCTGG TCGTTAAAAC CATCCTCGGG 
CCTTTCGCCA ATTGGAAGGC GCCATCTTTT CCGCATTCTT TCCATCCGGA 
TTCCGGCCGC TGTTGCTGTC TGGCGGAATA TCTGTTTCGC CAGATTTTCT 
TGCGTTTCGA TTTCTTTTTA TTATTTTCCT GAGAGAGAGA GAGAGAGAGA 
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGGGTTCCT TCCATTTCGC 
TGCTGCGCCA AAGAACACAA CTTTCCCAAT TCCTTTTCGC CTCCCTGTAG 
AGGCATGGAG TGGGACAAGG CCAAGGCGTC CTCCGGCGAG GCGGTGGACG 
ACAGGGGCAG AGGGGAAGGA GGGCTCGGGT ACGTGAAGGT GATGACGGAC 
GAGCAGATGG AGGTGCTCCG GAAGCAGATC TCCATCTACG CCACCATCTG 
CGAGCAGCTC GTCGAGATGC ACCGCGCCCT CACCGCGCAG CAGGACTCCA 
TTGCAGGAAT GAGGCTTGGT AATCTGTACT GTGATCCTCT AATGGTTCCC 
GGAGGTCACA AGATCACAGC AAGGCAGCGA TGGACACCAA CCCCAATGCA 
GTTGCAGATT CTTGAGAACA TCTTTGACCA AGGCAATGGA ACACCAAGCA 
AGCAAAAGAT AAAGGACATA ACAGCAGAGC TCTCACAGCA TGGCCAGATC 
TCAGAGACAA ATGTCTATAA CTGGTTCCAG AACAGGCGGG CACGATCGAA 
ACGGAAGCAA GCTGCTTTAC CAAATAATAA TGCAGAATCT GAAGCTGAAG 
CGGATGAGGA GTCCCCAACT GACAAAAAAC CCAAATCAGA TAGGCCGCTT 
CACCAGAACA TAGCCATGAG AGATCACAAT AGCGAAAGGA TCTCGGAGAT 
GCACCACTTT GACACGGAGC ATGAGCAAAT CCGTCGTATG ATGTATGCAT 
CCAATGACAG TAGCTCGCGA TCGTCAGGCA GTTTGGGCCA GATGTCCTTC 
TACGACAATG TTATGTCAAA TCCAAGAATC GATCATTTCC TTGGTAAGGT 
GGAGAGCCCC GGGAGCTTCC CCCACATGCG ATCCGGTGAA AGCTTTGATA 
TGTATTGATG ACGCGGCAAT TCTGGATTCT GGTTACTAGA AAATTGGAGT 
TTCTTCGATT GTGAAGATCA TTGAGTTGGA GATTAGACAA TGCTTGTTGA 
TGATACTATG GGCATGTTGG CAAGTGGCAT GGTTTGCCAG ATTTTGACTA 
AACCAAATGT TGCTTCTTGG CTATGTACAA TCCTCTATAG CTTCAATGAG 
CAGTTTTCCC TATGTTGTCC TC

Gene models with high sequence identity

AT4G35550.1 [+] show detail - WUSCHEL related homeobox 13
E-value: 6e-57; Score: 219.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	2.6e-18
HMMPanther	PAIRED-LIKE HOMEOBOX PROTEIN PEPP	1.6e-05
HMMPanther	HOMEOBOX PROTEIN	1.6e-05
Gene3D	Homeodomain-related	2.7e-07
HMMPfam	Homeobox	7.4e-19
ProfileScan	Homeobox	14.835
HMMSmart	Homeobox	1.9e-14

See the detailed result >

AT4G35550.1

Model type: Protein coding
Short Description: WUSCHEL related homeobox 13
Curator Summary: Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
Computational Description: WUSCHEL related homeobox 13 (WOX13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 14 (TAIR:AT1G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR