K17911

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17911

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17911

Determination of introduced cDNA(s)

  • J013026F02 - Rice Full-length cDNAs - Original: J013026F02

    full reading [+] show sequence

    Nucleotide sequence: J013026F02 - full reading 
    GAAGAAGAGC ATCAGCTTCC AACTCGAGCT CTTCTTCTAC TTAAAAGAAA 
    AAAAACACGC ATATCTAGTA GTACTGTTCT AGTGTTCTTG TACTTCTATT 
    CGTGTGCTAC TACTGCATCT GTGAGTCTGT GTGACTGTAC ACATCTGTAA 
    TGGAGTGCGA AACCGGGCTT GTTCGTTCCC TGAACGGCGA CGGGCTGTGC 
    ATGTCGTCGG TGTCGGCGCC GCCGCGGGCC GACCCACTGA ACTGGGGGAA 
    GGCGGCGGAC GAGCTGGCGG GGAGCCACCT CGACGAGGTG AAGCGGATGG 
    TGGAGGACTT CCGCCAGCCG CTGGTGAAGA TCGAGGGCGC CAGCCTGACG 
    ATCGCGCAGG TGGCCGCCGT GGCCGCCGGC GCCGGCGACG CCAGGGTGGA 
    GCTCGACGAG TCCGCCCGCG GCCGCGTCAA GGCCAGCAGC GACTGGGTCA 
    TGAACAGCAT GATGAACGGC ACCGACAGCT ACGGCGTCAC CACCGGCTTC 
    GGCGCCACCT CCCACCGCCG CACCAAGGAG GGCGGCGCGC TCCAGAGGGA 
    GCTCATCAGA TTCCTCAATG CCGGCGCCTT CGGCACCGGC ACCGACGGCC 
    ACGTTCTGCC GGCGGAGGCG ACGCGCGCGG CGATGCTCGT CCGCATCAAC 
    ACCCTCCTCC AGGGTTACTC CGGCATCCGC TTCGAGATCC TCGAGGCCAT 
    CACCAAGCTG CTCAATGCCA ACGTCACGCC GTGCCTGCCG CTCCGGGGCA 
    CCATCACCGC CTCCGGTGAC TTGGTCCCAC TGTCCTACAT TGCCGGCCTC 
    ATCACCGGCC GCCAGAACTC CGTGGCCGTC GCCCCGGATG GCCGCAAGGT 
    GACCGCCGCC GAGGCATTCA AGATTGCCGG CATTGAGCAC GGCTTCTTCG 
    AGTTGCAGCC TAAGGAAGGT CTTGCCATGG TGAACGGCAC TGCCGTCGGC 
    TCTGGCCTTG CATCGACCGT GCTCTTTGAG GCCAACGTCC TTGCCATCCT 
    CGCCGAGGTC CTGTCCGCCG TGTTCTGTGA GGTCATGACC GGCAAGCCGG 
    AGTACACCGA CCACCTGACA CACAAGCTGA AGCACCACCC TGGACAGATC 
    GAGGCTGCCG CCATCATGGA GCACATCTTG GAAGGCAGCT CGTACATGAA 
    GCTGGCGAAG AAGCTCGGCG AGCTCGACCC GTTGATGAAG CCGAAGCAGG 
    ACAGGTACGC GCTCCGCACG TCGCCGCAGT GGCTCGGCCC ACAGATCGAG 
    GTCATCCGCT TCGCCACCAA GTCGATCGAG CGCGAGATCA ACTCCGTCAA 
    CGACAACCCG CTGATCGATG TCTCCCGTGG CAAGGCGCTT CACGGTGGCA 
    ACTTCCAGGG CACGCCCATC GGCGTGTCCA TGGACAACAC CCGCCTCGCC 
    CTCGCTGCCA TCGGCAAGCT CATGTTCGCG CAGTTCTCTG AGCTCGTGAA 
    CGACTTCTAC AACAACGGGC TTCCTTCCAA CCTGTCCGGT GGACGCAACC 
    CCAGCTTGGA CTATGGGTTC AAGGGCGCGG AGATCGCCAT GGCGTCGTAC 
    TGCTCCGAGC TCCAGTTCTT GGGCAACCCG GTGACCAACC ATGTCCAGAG 
    CGCGGAGCAG CACAACCAGG ACGTGAACTC GCTTGGTCTC ATCTCCTCCA 
    GGAAGACCGC CGAGGCCATC GACATCCTGA AGCTCATGTC CTCCACGTTC 
    TTGATCGCCC TGTGCCAAGC CATCGACCTG CGCCACCTCG AGGAGAACAT 
    GAAGACCGCG GTGAAGAACT GCGTGATGCA GGTGGCCAAG AAATCCCTGA 
    GCATGAACCA CATGGGCGGC CTCCACATCG CTCGCTTCTG CGAGAAGGAC 
    CTGCTCACCG CGATCGACCG CGAGGCCGTG TTCGCCTACG CCGACGACCC 
    CTGCAGCGCC AACTACCCGT TGATGCAGAA GCTCCGCGCG GTGCTCATCG 
    AGCACGCGCT CGCCAACGGC GACGCCGAGC GCGTCCTGGA GACCTCCATC 
    TTCGCCAAGG TGGCCGAGTT CGAGCAGCAC GTCCGCGCCG CGCTGCCCAA 
    GGAGGTGGAG GCCGCCCGCG CCGCCGTCGA GAACGGCACC CCGCTCGTCC 
    CCAACCGGAT CAAGGAGTGC CGCTCGTACC CGCTCTACCG GTTCGTGCGC 
    GAGGAGGTCG GCACCGAGTA CCTCACCGGC GAGAAGACGC GGTCGCCCGG 
    CGAGGAGCTG AACAAGGTGC TCGTCGCCAT CAACGAGCGC AAGCACATCG 
    ACCCGCTGCT CGAATGCCTC AAGGAATGGA ATGGCGCGCC ACTGCCACTC 
    TGCTGAACAG AAATGGAATA CTAAAAAAAA TGCAAAACAA GAAGACGTAT 
    AGCAACACAA AACTGAAAGA TAGAGAGCAT TTCGAGAGTG TGAATGTTTT 
    CTACTATGTC TAGATGAACA TGGTGATGAT ACTATTTTAC GGTTCTTTGT 
    AGTTAACTTG ATGTTACTGT TGCTGTTTCA GCTTCTGCGG TTGCCATAAC 
    CTGCAGTTCC GCATGGCCTG GCACGCAGCT TTCTGAAACT TTTGGTGCTG 
    TAAATTTGTA TAAGTTGGGG GACTAAAGTA AATTATTTTG TTTT

    Gene models with high sequence identity

    1. AT2G37040.1 [+] show detail - PHE ammonia lyase 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phenylalanine/histidine ammonia-lyase 2.2e-175
    HMMTigr Phenylalanine ammonia-lyase 0
    Gene3D no description 1.8e-81
    Gene3D no description 8.4e-113
    PatternScan Phenylalanine/histidine ammonia-lyases, active site 0
    superfamily L-Aspartase-like 6.4e-166

    See the detailed result >

    AT2G37040.1

    Model type
    Protein coding
    Short Description
    PHE ammonia lyase 1
    Curator Summary
    Encodes PAL1, a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
    Computational Description
    PHE ammonia lyase 1 (PAL1); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: in 10 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 2 (TAIR:AT3G53260.1); Has 4888 Blast hits to 4867 proteins in 1414 species: Archae - 40; Bacteria - 2973; Metazoa - 79; Fungi - 127; Plants - 1176; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR