K17924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in greater numbers in organism (PATO:0000470)
    (Seed::Number::many)

Invisible phenotypes

Original: K17924

Determination of introduced cDNA(s)

  • J023035E20 - Rice Full-length cDNAs - Original: J023035E20

    full reading [+] show sequence

    Nucleotide sequence: J023035E20 - full reading 
    GATCTCCTCC AAATCCATAG CCCTCCTCCT CTCCTCTGTA ATGGCGGGGA 
    AATCCGGCGC ACGCACGAGG AAGCGCGTGG AGGCGACGGA TTCCGCCGTC 
    CTGAAGCGCG CGCGCGACGG CAGCGCCTTC ACCCGCTGCG AGGCTTGCGG 
    CAAGAGCGTC TCCGTGGTCC TCATCGACAT GCACAACTGC AGCCTCGACG 
    ACAAGATCCG CATCAGCCTA GAGGCTCAGG TGGTGGAGCA GGCCGTGGAG 
    GTGGCAGCGA GCAAGAAGAA GAGCGGCAAG AACAACAACA ACAATGGCGA 
    GGGGGCCAAA AAGGGCAAGC GCCCACCCAC TGCCTTTTTC CTCTTCATGA 
    GTGACTTCAG GAAGGAGTAC AAGGCGGAGC ACCCTGACAA CAAGAGCGTC 
    TCCGCTGTCG CCAAGGAAGG AGGGGAGAGG TGGAAATCCA TGTCTGACGA 
    GGACAAGAAG CCTTACTTGG ACAAGGCTGC AGAGCTCAAG GCCGAGTACC 
    ACAATGGCGA GCGCAGCGAC GAGAACAATG TTGGTGGCAA CGCAGGCGAG 
    CAGGAGGTAG ATCAGCCACC CAAGAAAGGC ACTGATGAAG ACGACCAAGA 
    AGATGAAGAT GGTGCAGAGG AAGAGAAGAA CGAGCTAGAC GACGACATCT 
    AGGCCACCGG TCCAATGGAT GGATGGATGG ATAATTCCTT CTCTTTTTGT 
    AAATGGCGGA TCCATCACAT TGCTAGTATG CTAGTGGGAG CAGCAGTATC 
    GATTGATTCT GGTGGTGGTG ATCTTCTAGT ACTAGAACTA CTAGTGCTTG 
    CAGTGTGACC TGCACATCAA GTGAATGAAT GAATGAATGA TTAGACGACT 
    TAATTATCCC TCTTTTTTTG GATTCGATTG GAGTGCAACT TCTTCCCCAT 
    TCCATTCTCA AGGGCTTCCT TCCTTTGCTG CTCTCTGTCT CTATATGTTG 
    CTTCCTTGGT GAATTGACTC ATGACTTGTA TCTGATTTCA TCAACTTAAT 
    TGAAACAACA AATGCTG

    Gene models with high sequence identity

    1. AT5G23420.1 [+] show detail - high-mobility group box 6
      E-value: 4e-30; Score: 129.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan High mobility group, HMG1/HMG2 17.926
    Gene3D High mobility group, HMG1/HMG2 1.6e-18
    HMMSmart High mobility group, HMG1/HMG2 9.6e-23
    HMMPfam High mobility group, HMG1/HMG2 4.2e-22
    HMMPanther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN 1.2e-24
    superfamily High mobility group, superfamily 2e-20

    See the detailed result >

    AT5G23420.1

    Model type
    Protein coding
    Short Description
    high-mobility group box 6
    Curator Summary
    Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
    Computational Description
    high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR