K17924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in greater numbers in organism (PATO:0000470)
    (Seed::Number::many)

Invisible phenotypes

Original: K17924

Determination of introduced cDNA(s)

  • J023035E20 - Rice Full-length cDNAs - Original: J023035E20

    full reading [+] show sequence

    Nucleotide sequence: J023035E20 - full reading
    GATCTCCTCC AAATCCATAG CCCTCCTCCT CTCCTCTGTA ATGGCGGGGA 
    AATCCGGCGC ACGCACGAGG AAGCGCGTGG AGGCGACGGA TTCCGCCGTC
    CTGAAGCGCG CGCGCGACGG CAGCGCCTTC ACCCGCTGCG AGGCTTGCGG
    CAAGAGCGTC TCCGTGGTCC TCATCGACAT GCACAACTGC AGCCTCGACG
    ACAAGATCCG CATCAGCCTA GAGGCTCAGG TGGTGGAGCA GGCCGTGGAG
    GTGGCAGCGA GCAAGAAGAA GAGCGGCAAG AACAACAACA ACAATGGCGA
    GGGGGCCAAA AAGGGCAAGC GCCCACCCAC TGCCTTTTTC CTCTTCATGA
    GTGACTTCAG GAAGGAGTAC AAGGCGGAGC ACCCTGACAA CAAGAGCGTC
    TCCGCTGTCG CCAAGGAAGG AGGGGAGAGG TGGAAATCCA TGTCTGACGA
    GGACAAGAAG CCTTACTTGG ACAAGGCTGC AGAGCTCAAG GCCGAGTACC
    ACAATGGCGA GCGCAGCGAC GAGAACAATG TTGGTGGCAA CGCAGGCGAG
    CAGGAGGTAG ATCAGCCACC CAAGAAAGGC ACTGATGAAG ACGACCAAGA
    AGATGAAGAT GGTGCAGAGG AAGAGAAGAA CGAGCTAGAC GACGACATCT
    AGGCCACCGG TCCAATGGAT GGATGGATGG ATAATTCCTT CTCTTTTTGT
    AAATGGCGGA TCCATCACAT TGCTAGTATG CTAGTGGGAG CAGCAGTATC
    GATTGATTCT GGTGGTGGTG ATCTTCTAGT ACTAGAACTA CTAGTGCTTG
    CAGTGTGACC TGCACATCAA GTGAATGAAT GAATGAATGA TTAGACGACT
    TAATTATCCC TCTTTTTTTG GATTCGATTG GAGTGCAACT TCTTCCCCAT
    TCCATTCTCA AGGGCTTCCT TCCTTTGCTG CTCTCTGTCT CTATATGTTG
    CTTCCTTGGT GAATTGACTC ATGACTTGTA TCTGATTTCA TCAACTTAAT
    TGAAACAACA AATGCTG

    Gene models with high sequence identity

    1. AT5G23420.1 [+] show detail - high-mobility group box 6
      E-value: 4e-30; Score: 129.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan High mobility group, HMG1/HMG2 17.926
    Gene3D High mobility group, HMG1/HMG2 1.6e-18
    HMMSmart High mobility group, HMG1/HMG2 9.6e-23
    HMMPfam High mobility group, HMG1/HMG2 4.2e-22
    HMMPanther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN 1.2e-24
    superfamily High mobility group, superfamily 2e-20

    See the detailed result >

    AT5G23420.1

    Model type
    Protein coding
    Short Description
    high-mobility group box 6
    Curator Summary
    Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
    Computational Description
    high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR