K17926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17926

Determination of introduced cDNA(s)

J033029L21 - Rice Full-length cDNAs - Original: J033029L21

full reading [+] show sequence

GACTACTACT ACTCCGTCCT CCTCTTCACC GGTTAGATCG GCGGCGGCGG 
CGGCGATGAT GAGGGCACGG TGGGCGGCGG GGATGCTGCG CCGCGCTAGC 
TCTGGCGAGG CTTCGCTCGC CGCGCGCGCG GTCTTCGCGC GCGGCTTCCT 
CGGCCTCAAC ATGAAGGCGA GTAAGGAGAC CATCGAGAAG AAGGAGAAGG 
ATAAGGCCAG GCTTATGGAT GAAATGAGCA GGGGGTACTT CGCCGACATC 
GCAGAGATAC GCAAGAACGG CGGCAAGCTT GCGACAGCGA ATAAGATCAT 
CATTCCGGAA ATCGCAGCCG TGAAGTTCCC TGATCTTTCT GTGAAGTCCC 
CTGATGGCAG GACAGTGAAT TTGCCGCTTG TCGCACCTCC GCGAAACGAT 
GATCCCCAGA CTGGCAATAC AGTGGACACA CAAAATGATG ATTGTAAGGC 
TGGTGATATG GTGGTTCCTG ATGCTTCATT GGTGTGCCTT TCCTTTCGCG 
CAAGCTCCCA GAAAATGGCA GAAACGTGGA GCCTACCTTT TCTTGATGCA 
TTTAGTTCTG CTGGGAATAT TCAAGTGTAT GAGGTCTCAT TTATTGATTC 
ATGGCTGTTA TCATCAAGTC CTGTGAGACA AGTATTCCTC AAGGTGATGA 
CAAAATCCAA CAATCCACAG AGACATGCTG TATATGCCTT TGGTGACCAC 
TATTATTTCA GGAAGAAGCT TCATATCCTT AACCTTCTTA CTGGGTACAT 
ATACCTGGTT GATCGCCTCG GAAGAGTGAG GTGGCAAGGT TTCGGATCTG 
CGACGCAGGA AGAGTTGTCA TCGCTAACTG CATGTACCTC CATTTTGTTA 
GATGGAAAAT GAGATTTAGA TGGATACTGA AATATTTGGG GTTGGAGAAA 
TTTTGTCATT GCGAATCCAT AGCTGTATCA CCTCTCGTTT CAGCATATTG 
AGGGATGATT TTTTTTCCTC GCGGTTAATA AGCGTAAATT GGATTG

Gene models with high sequence identity

AT1G08220.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synt...
E-value: 1e-62; Score: 237.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	ATPase assembly factor ATP10, mitochondria	1.1e-68

See the detailed result >

AT1G08220.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link: InterPro Scan - TAIR