K17937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17937

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17937

Determination of introduced cDNA(s)

  • J013147O19 - Rice Full-length cDNAs - Original: J013147O19

    full reading [+] show sequence

    Nucleotide sequence: J013147O19 - full reading 
    GGCTGGTCGG GCTGGTGAGC GCGTACCGGT ACGAGGGCCC GAGGGTGAGC 
    GAGGAGACGG CGCGCGCGGA GGCGAAGGCG CTCGTCGCCG CGGTGAAGAG 
    CGCCGGCCAC GCGGCGGCGA AGCTGGTGGA GAACGACGAC GTCGTCAGGA 
    TCCTCACCAC CCGGAGCAAG CCGCACCTCG TCGAGACCTT CAAGCACTAC 
    AAGGAAATCC ATGGCCGCCA CATCGAAGAG GATCTTGGGC ACGAGGAGAC 
    ACTGAGGGAG GCGGCGCTGT GCCTGGCGAC GCCGGCGAGG TACTTCAGCG 
    ATTGCTCCTC CGATCTGTCG CCTCGCCTTG TCAGTGCGTC GCCATCGTGT 
    ACGTTGTTGC TGCTGCTGTT GTTGTTGTTG TGTTTTTGTT GCATGCGTGG 
    ATCGAGACTT GTAAACTTAG CATTTCGCAG CAGAGCTGTT GGTATGGAAT 
    AAGGTCGATT TAATTTTTCT CG

    Gene models with high sequence identity

    1. AT2G38750.1 [+] show detail - annexin 4
      E-value: 3e-14; Score: 74.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Annexin 3.39999972437687e-16
    HMMPanther Annexin 4.80000830876701e-27
    HMMPanther Annexin like protein 4.80000830876701e-27
    HMMPfam Annexin repeat 1.6e-08
    Gene3D Annexin repeat 3.09999945899369e-09
    HMMSmart Annexin repeat 0.0109999999702296

    See the detailed result >

    AT2G38750.1

    Model type
    Protein coding
    Short Description
    annexin 4
    Curator Summary
    Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
    Computational Description
    annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR