K18004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18004

Determination of introduced cDNA(s)

J023059K19 - Rice Full-length cDNAs - Original: J023059K19

full reading [+] show sequence

GTATTGCCGT GTGGTCGCCG GCCGTGAGCA GTCTCATACT CTCAGTTAGT 
ACTCTATCAG TGCAGCAGCT AAGCCTCAGC CTCAGCCTCA GCTAGCTCGC 
CCGACGCCCG GCCCCTCCTC TGACCTCTCT CTGCGGCCGG CGCCGCTCAT 
GGAGTACGGC ATCACGCCGG CCGGGGGGTT TCGGTGGAGA AGCTACCGCG 
ACTTGATCAG GGACGTGTTC ATCGCCGGCG ACATGTACTG CGGGCCGGCG 
AAGCTGTTGT TCCCGCAGAT CACTGGTAGT GCCGGCGAGG ATCAAGCGAG 
GTGCGGCTGG TCGAGCGCGA GCTCCGTGGC TTCTAGCCCC GTGGTGTCGT 
CTTCTTACAT GTCATCCTCT GGATCCCCTG CTTGGTCCTC GGCGTCGTCT 
TCTCCCGTCC ACAAGCTCCG CGTCATCGCT CAACAGATGG TCGGCGACGG 
CTACATACAG GAACTCATCC GGGCGTTCGG CCGCCGCCGC CCCGACGAGC 
TCATCTTCCA GAGGTGGTTC TCGCAGCTGG ACGTGGACTT TGTCCTGGTC 
CTCCACACCG ACGGCATGGT GCGAGCTGAC AGCTTCTCCG TGGAAGACCT 
GATGGCCTTG ATAAAGCGGT GGATCCGAGC TCTCCTGACC ATGGTGCAGG 
TCCTCAATAT CACGCTGCTC GAGCTCCCAC TCCCGGTCGC CGGAAGTACG 
GAACGGATGG CGGCGGCGGC GGACCACGCG CAGTTCACTG GGTTCGCGGA 
GGAGAGCATC CTCAGGATGC TGGCCTTCGT CGACGCCGTC ACTCTTTCTG 
CTCTCAACGT CAACGACGAC CACCGCCACC GGACGCCGGA GCTACTCCCG 
GGGATGCTGC AGCTGTACGC CTGCGTCTCC GAGGCATGCG ATCTCCTCGT 
CTCAGCTGGC ATGGGCAAGG ACGAGATCAC GAAGATGCAG GCCTTGGACG 
CCATGAACAA TGGCATCCTG ATGCAAAGCA GGAGGAAGCT GAGCGATGCT 
ATCTGGGTCA TGATGGAGAA GGTCCGGGCT CTCTTCTTGA TGGACGCCTG 
CTGGCAGGTC TCGCAGGAGG CAGCCGCATC CGGGACCCAT GAGACCACGG 
AGCTGACGAT GAACTACATC ACGCTTCTCT GGCGCAACCA TACCATGCTC 
GACTACTTCA GCGTGTTCGT CTCCGACGCC GACAGCTTCA GCTCGGTGGC 
GAGACTCATC GCCGAGATGA TCACCTGCCT CGAGTGCAAG CTCGAGGAAA 
CCTCCCTCTC CATCCCGGAC CTGGGTTTGC GCTTCATATT CTTGCTCAAC 
AATTGGCACC GTGTCTTGCA GCGTGTTGAA TCCTTGCGAG ACTTGCCAGC 
GGCCGTCCGG CAAGAACGAA TCCTTCTCCT CCATGCCTCG GACAGCAAGA 
TTAAGAGGTA CATAGACGAT TATCTTAATG CCTCCTGGTC GCCTCTGTTA 
CGTTGCCTGC TCATCGACAA GCCTTTTGTT GCTCTCGGGA GGTCTCATGA 
ATCTAAAATT GAGACACAAC TCCAAACAAC CTACGCAACA CAAAAGTTTT 
GGAAGGTTCC GAACCCTCAG CTTCGGCAGA GACTGCGTAG AGCCATCATG 
AGCAAAGTTA TTCCAGATTA TAGTAAATAC ATAGAGCAAA TGGATAGGCA 
GAATAAAATC AATCGACACC TCGTGGTCAC TAGTCCCGAG CAGCTCGAGC 
AGCAAATAGA GGAATTATTT GAAGGATGAT GATTATTAAT TCAACTAGGA 
AGGTAACCCC CGCATTCACG TGGGTAAGTA TGTTTTTTTT CACGTGTTTG 
ACCATTTATC TTATTTAACG TTTTTATGCA AACATGTGGA AATGTAAGTC 
ATGCTTAAGT TATAAACCAA GTCACAACAA AATAAATAAT AATATTTATT 
TTTAATATGC TACGTGAGCC GTGGATCTCG CATCCGACGG CGGAGATCTG 
TAGTTAGCTG CAGTACGAAC TCCAAGATGT AATGTGTGTA TGACAGGTGA 
GACTAGATAT TAATAGTATA GTAAGCAACT ATTGTAAGAA TTGACTATTA 
CATTGGCTAT AGATGATTTA GAGTTAGTAG TAGGCTATAC TATTAAACTT 
GCTCTTATGC ATTCAACGGC ATGGTTTTTG ACGGAAGGTA CACGTGTTTG 
ACCATTTGTT TTATTTAACG TTTTTATGC

Gene models with high sequence identity

AT5G50380.1 [+] show detail - exocyst subunit exo70 family protein F1
E-value: 2e-14; Score: 78.20

InterPro Scan Digest

Program	Description	E-value
HMMPanther	EXOCYST COMPLEX PROTEIN EXO70	6.3e-16
HMMPanther	Exo70 exocyst complex subunit	6.3e-16
HMMPfam	Exo70 exocyst complex subunit	9.4e-83

See the detailed result >

AT5G50380.1

Model type: Protein coding
Short Description: exocyst subunit exo70 family protein F1
Curator Summary: A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description: exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link: InterPro Scan - TAIR