K18013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18013

Determination of introduced cDNA(s)

J033060N07 - Rice Full-length cDNAs - Original: J033060N07

full reading [+] show sequence

GACATGCACT TGCAGTCAGT GGTACAACAC CACAGCAACG CACCACCGGC 
CATCAACCTC CTCTTCCCTG CTTCTCGCTC GCTCTCCTGC CCTGTTTCTT 
GGAGAAGTGA GCTTAAGTGA GAGCCTCTGT CCCTCGCACA CGCTATTGGC 
CATGGTGGTT CTCGCTGGCC CGCCCGCCGT CGATCACATC CCGCTGCTGA 
GGTCGCCGGA CCCCGGCGAC GTCTTCTCCG GCGTGCCGGT CGTCGACCTC 
GGCAGCCCCG GCGCGGCGAG GGCCGTGGTG GACGCCTGCG AGCGGTACGG 
GTTCTTCAAG GTCGTCAACC ACGGCGTGGC CACGGACACG ATGGACAAGG 
CCGAGTCGGA GGCCGTCAGG TTCTTCTCCC AGACGCAGCC CGACAAGGAC 
CGCTCCGGCC CGGCCTACCC GTTCGGGTAC GGCAGCAAGC GGATCGGGTT 
CAATGGCGAC ATGGGGTGGC TCGAGTACCT CCTCCTCGCC CTCGACGACG 
CGTCGCTCGC CGACGCCTGC ACCGTCCCGT CCTGCGCGGT CTTCCGGGCC 
GCTCTGAACG AGTACATCTC GGGGGTGCGG AAGGTGGCGG TGCGGGTGAT 
GGAGGCGATG TCGGAGGGGC TGGGCATTGC GCAGGCGGAC GCGCTGAGCG 
CGCTGGTGAC GGCGGAAGGG AGCGACCAGG TGTTCCGCGT GAACCACTAC 
CCGCCGTGCC GCGCGCTGCA GGGGCTCGGC TGCAGCGTCA CCGGCTTCGG 
CGAGCACACC GACCCGCAGC TCGTCTCCGT GCTCCGCTCA AACGGCACGT 
CCGGCCTGCA GATCGCGCTC CGCGACGGCC AGTGGGTGTC CGTGCCCTCC 
GACCGCGACT CCTTCTTCGT CAACGTCGGC GACTCGTTGC AGGTTCTGAC 
CAATGGGAGG TTCAAGAGCG TGAAGCACAG GGTGGTGGCC AACAGCCTAA 
AGTCTAGGGT TTCCTTCATC TACTTTGGAG GGCCACCGTT AGCACAGAGG 
ATTGCACCAT TGCCACAGCT GCTGGGGGAG GGAGAGCAGA GCCTGTACAA 
GGAGTTCACA TGGGATGAGT ACAAGAAGGC TGCCTACAAA TCAAGGCTTG 
GAGACAACAG GCTGGCCCAG TTTGAGAAGA AGTAGCTAGC TAGATGCCTA 
GCAACAGAAC TGGCCGGTCA AGCAACAACG ACTTTACTGC ATGGCAGCTA 
GCTACCTTAG CTATGTCTCA CGCACACGTA CGGTACACCA TGACCACGAG 
AAGATGAAGC TGCTTAAGAG AGAAAAAGAA AAGAAAATAA AAACAGGAAG 
AAGATAATAA CTTCAAGATG CACAATGTAC AGCCAGGTTG GATGGATAGC 
TAGATTTTTC TCGTGTGGCT AATCACCGTG TGTGGTGAGG TGGGCTCCTT 
TCCTGTTTCG GAATACTGAT CGATGGATGA ACAGCCTCCA ATAGTTAATG 
TTAACCAAAT ATAGCACAAC AAAGGGGTTC TTTTCTTCCT TTGGTTGTTT 
CTTTTTTCCT CTTGCCTTTG ATTTTCTCGT CATGCTTTCT GAGCATTAAT 
TATGTGTGCG TGTATTTCGG TATACGTAAC GTACTTTTAC CTATGTGTGT 
ATAGTACGTG GCTTGTGTTA ACAAGTAAAT ATTATAGTCT CTCTCTTTCG 
TTATGCAACT GACTTCTGCG CGGTCCAAAT GCATTGATGG AGATATATCT 
ATTGGTGTAC AATGTCACCT TCAAGATTAA TGAATTTTCA TCACTCAGG

Gene models with high sequence identity

AT1G30040.1 [+] show detail - gibberellin 2-oxidase
E-value: 6e-91; Score: 332.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GIBBERELLIN 2-BETA-DIOXYGENASE 2	1e-132
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	1e-132
Gene3D	no description	5.7e-78
superfamily	Clavaminate synthase-like	5.4e-83
HMMPfam	Oxoglutarate/iron-dependent oxygenase	3.2e-23

See the detailed result >

AT1G30040.1

Model type: Protein coding
Short Description: gibberellin 2-oxidase
Curator Summary: Encodes a gibberellin 2-oxidase that acts on C-19 gibberellins. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.
Computational Description: gibberellin 2-oxidase (GA2OX2); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 2-oxidase 3 (TAIR:AT2G34555.1); Has 8540 Blast hits to 8490 proteins in 994 species: Archae - 0; Bacteria - 1137; Metazoa - 84; Fungi - 1033; Plants - 4909; Viruses - 0; Other Eukaryotes - 1377 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013001C12 - Rice Full-length cDNAs - Original: J013001C12

full reading [+] show sequence

GCTCCGAATT CCCAAACATC CAAAGAAACA CCCACAAAGA AAAAAAAAGT 
TCGGTTTTTT ATCCGCTTTG CTCACGGCAG CGAGGAAAAA AAGCTGGAAT 
TTTTTATACT CGTACCACGG CGAGTAGTGG TGGTGGTGGT GGTAGTACAA 
TCCCAATAGA AGAAGAAGAA GAAAGAATAA ACTAGCAGCT CAGGAGGCGG 
AAGCGAGCGC ATGAGCTCGA GAGAAAGAGA GGCGGAGAAG TGGTGAGGTG 
AGGAGAGGAG AGGAGGGCGA GTAGTAGGCG TCTAGGTCCC ATCTCTAGGG 
TAGTAGTAGT AGTAGGCTTG TCTCCTCTTC GTCATCTCTC CTCTCCTCTC 
CTCTCTTCTC TTCTCTTCTC TCCGCCACGG CGCCACCCAC CTACCCCCGA 
GGTCGCTGCT GCTGCTGCTG CTGCGGTTTT CGTTAGAAGA TACTCTCGGT 
AGCATCAGAC CTGCATCTTG GAAGTTCAGT ATGGGTTCAG GAATGGTGAA 
GAAGAAGGTG GTGAAGGCCG GTTCTTTCGA TTTGGATGCC AAACTTGATA 
AAAGTTGGAT GAAGGATATC ACTTGTCCAA TCTGTCTGGA TTTTCCTCAT 
AATGCTGTCC TATTGAGGTG CACCTCATAT GAGAAGGGTT GTAGGCCGTT 
CATATGCGAC ACTGACCAAT CCCGTTCGAA CTGTCTTGAG CGGTTCAAAG 
GTGCTCATGG ACTGCCGACC AATATGAAAG TCCCATCTTT TAATGGAGCC 
CCTCTTGATA GCATTCATAT CATTTCGTCA AATACAACTG ACCGCCCAGC 
TTGCCCGTTG TGTAGAGGCG ATGTTATTGG GTGGGTTGTT ATTGACGAGG 
CCCGTCTGCA TCTTAACCAA AAGAAAAGAT GCTGCGAAGA AAGCTGTTGT 
TCATATGTGG GCAACTTTCA TGAGCTTCAG AAGCACACCC AGCAGAAGCA 
TCCAAATTCA CGCCCGTCAG AAATTGATCC TGCTCGGAGA GTTGATTGGG 
AGAATTTCCA ACAGTCTTCA GATATCATAG ATGTCTTGAG CACGATACAT 
GCACAGGTGC CTAATGGTAT AGTTTTGGGA GACTATGTCA TCGAGTACGG 
TGATGATGAT GCCGGAGATG ACTATGAAGT TTACCACAGG GTTAGGGGGA 
ACTGGTGGAC ATCCTGTATT TTCTGTAAGT CATTCTGCAG ATCTTCAGGA 
GGCAGAAGTA GAGCAAGAGC AAGGGAAAGG AGAAGTAGTG GAAGGAGGAG 
CAGCAATAGG TCTAGCCAAG AAAGCTTTAC TATTGAGGTG CCCTCGGGAT 
CTGTTGACAT AAGGGAAATC AGATTTGATG AAATAGATGA TGAATATATA 
GTTACAGGAG CAATGCCCGG CATTGCAGCA TCCAGGAGGA TCGCCAGTCA 
TTACAGGGAT CCTAGATATG GACGCAGACG TTCATACTAC TAGGATGAAC 
CAGCCAGCTG AAATGTAATG CAGTGCAGCC ACAACCAGAA TATTGTGCCT 
CTACCCGCCT CTTTTTCTTG TTCTCTCAAA AATCTGGAAG ATGCTATCCC 
AGCCCAAATT TGGTGTGCAT ATAAGATAGC AGCAAACCCT TCATTGTTGT 
TCATTTACAG CAGGTTTCAA CATCTTAGGT TCCTATGTAA ATATGTAACC 
ACTACCCTAT AGCAATGTTG ATCCAAGGTT TCTCTCCGGG AATCCATTTT 
ATCTTAAAAA TGTTTCTCTG GAAATACACC AAACTTTTAC AGGAAAAGCT 
CACAAATTTG CC

Gene models with high sequence identity

AT4G31410.2 [+] show detail - Protein of unknown function (DUF1644)
E-value: 4e-65; Score: 246.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1644	2.4e-64
PatternScan	Zinc finger, C2H2-type	0

See the detailed result >

AT4G31410.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF1644)
Computational Description: Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT3G24740.2); Has 266 Blast hits to 247 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023004I03 - Rice Full-length cDNAs - Original: J023004I03

full reading [+] show sequence

GGTCCCCTAC ACACCTACCC GAGGAAGAGG AGGAGGTGGG GTGGCCATGG 
CGGCGGCGGA GAAGACGAAG CCCGTTCTTT ACAGCGAGTG GATGAGCTCG 
TGCTCCTACA GGGTCCGGAT CGCCCTCAAC CTCAAAGGTA TTGATTATGA 
GTACAGGGCA GTGACACGGG GTGATCCAGA TTATGGGAAG ATCAATCCAA 
TTAAGTATGT GCCAGCATTA GTAGATGGGG ATTTCACTAT TTCTGATTCT 
CTAGCAATCA TATTGTATCT TGAAGACAAA TATCCCCAGC ATCCTCTTTT 
ACCTCAAGAT CTAAAAAAGA AAGCTCTTAA CATGCAGATT GCAAATATCG 
TGTGTTCAAG CATCCAACCT CTTCAATGCT ATGCTGTAAT TGGTTTAGCT 
GATGGCAAAA TGAGCGCCAA CGAGAGCCTT CAGATAGTTC AGCATTACAC 
TGACAAGGGA TTTAGAGCAA TTGAAAAACT TCTGGAAGGA TGTCGCAGTA 
AATATGCTAC TGGAGATGAA GTCCAATTGG CGGATGTGTT TCTAGCGCCC 
CAGATTCACG CAGGAATAAC ACGTTTCCAA ATTGATATGT CAAAATATCC 
AATTCTGACG AGATTTTACA AGGCCTATAT GGAACTTCCA GCATTTCAAG 
CTGCTGTCCC TGAAAACCAA CCAGATGCAC CTTCATCCTG ATAATTGAAG 
GGTGCTGCTC CATCAAGATG CCTGCGTGGA AGTCTGCATT TCTGCAAGTC 
TCCATGAAGT ATACCCACGA CATCATGCAT TTCAAGCTGC ACATCCTCAA 
AACCAACCAG ATGCACCTCT ATCCCAATAA TCAGGATTCC AAGCGAGCCG 
TATACATTGA TATTCATGTA ACTTTTACTT AAAAAATTGG ATGAGTAGTC 
TCCAGTGCCA TACATGTAAT TTCAGTGTAA AATGTTCAGT GTAAACAAGA 
TAGTGGGACA TGAATTACCT GTGACCCACA ACATTATCCA TCCAGTACTC 
CAGTACCTAG GGATATGGTA TTGTTGTATA TGTAATTGAT GATGCACTGT 
CTGAACTTCA GATGCAGTAT GTGATTAGTC CACTGATGAT GCACATACGT 
ATGCACTGAC GTAAGCAGAA TTGAATGTTG GTACACATGT AAACACCTCA 
ACTATTACTG AATAAACTCT CATACTGGCC CG

Gene models with high sequence identity

AT2G02390.1 [+] show detail - glutathione S-transferase zeta 1
E-value: 2e-62; Score: 236.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glutathione S-transferase, N-terminal	0.00000000000038
HMMPfam	Glutathione S-transferase, C-terminal	0.00000011
Gene3D	Thioredoxin fold	1.5e-21
Gene3D	Glutathione S-transferase, C-terminal-like	3.2e-41
ProfileScan	Glutathione S-transferase, N-terminal	24.874
ProfileScan	Glutathione S-transferase/chloride channel, C-terminal	21.39
HMMTigr	Maleylacetoacetate isomerase	1.5e-81
HMMPanther	GLUTATHIONE-S-TRANSFERASE THETA, GST	3.3e-57
HMMPanther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY,	3.3e-57
superfamily	Glutathione S-transferase, C-terminal-like	2.3e-31
superfamily	Thioredoxin-like fold	2e-26

See the detailed result >

AT2G02390.1

Model type: Protein coding
Short Description: glutathione S-transferase zeta 1
Curator Summary: Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.
Computational Description: glutathione S-transferase zeta 1 (GSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class zeta) 2 (TAIR:AT2G02380.1); Has 17196 Blast hits to 17170 proteins in 1512 species: Archae - 0; Bacteria - 9185; Metazoa - 2216; Fungi - 532; Plants - 2070; Viruses - 0; Other Eukaryotes - 3193 (source: NCBI BLink).
Link: InterPro Scan - TAIR