K18031

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18031

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18031

Determination of introduced cDNA(s)

  • J013159G01 - Rice Full-length cDNAs - Original: J013159G01

    full reading [+] show sequence

    Nucleotide sequence: J013159G01 - full reading 
    TGCCCACACC ATTCACAGCT CGCATCGCAC GCGGCGCAAC CAATACGCCA 
    TTCCACCGGA GCAGCCGGGA GCGCGGAGGC CATGGCGATG TGGGTGTTCG 
    GGTACGGGTC CCTGGTCTGG AACCCCGGCT TCGCGCACGA CGCCCGCCTC 
    GTCGGCTTCG TCAGGGACTA CCGCCGCGTC TTCTACCAGG GGAGCACGGA 
    CCACAGGGGC ACGCCGGAGT TCCCCGGGAG GACCGTCACG CTCGAGCACC 
    AGCCCGGCGC CACATGCTGG GGTGTTGCTT ACAAAATTTC AACGGAACAA 
    GATAAGCAGA CAGCTCTGGA GCATCTGGAA GTAAGAGAGA AGCAATATGA 
    TGAGAAGATT TACCTTGATT TGTATATGGA CTCCTCACCA AAAACACCAG 
    CCGTCAAAAA TGTGATGGTA TACTTAGCCA CAACAAACAA GCAGAGCAAC 
    CAAAACTACC TTGGTCCTGC ACCGCTGGAA GAAATGGCCA AGCAAATTTA 
    CCTAGCTGAA GGCCCATCTG GACCTAACAA AGAGTACCTG TTCAAACTTG 
    AGGATGCATT GAACAAAATA GGAGTTGTTG ATCCACATGT CCAGGATCTG 
    GCAAATGCTG TGCGCAAGTA TCCAGACACT GCGGTATCTT GCTGAAGGAT 
    GGCATTTCCC TCCTCTTTGG GAGGGTAAAA ATATAACTGA AGGAAGTTAG 
    ATCAATTCAT GCTCAAACAT CTTGAATCTT GTAAATGTGG ACAGCTTCTG 
    CCGATATTCT TGTCCATCTG TAGATGGCAG TAGAAAATTC GCAATAAGGA 
    TTTAAGTTGG GGGTATGAAA ACTGCCACAT TACTGCGTTG GGAATCAAAC 
    CCTTCTTTTT TACTTTCAAA ACAAGATTGT TCTCTACTTC TCTTATATTG 
    AAGCATAATC ACTGTGCATG GTCTAGTTAG CTGCAGCCTG CAGGCTTGGT 
    CACTCGACCA TGCTTTGTCG TATAAAATGT TTTATGATTC AAGCT

    Gene models with high sequence identity

    1. AT1G44790.1 [+] show detail - ChaC-like family protein
      E-value: 3e-66; Score: 248.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily BtrG-like (Pfam 03674) 6.8e-07
    HMMPanther ChaC-like protein 4.6e-74
    HMMPfam ChaC-like protein 1.3e-62

    See the detailed result >

    AT1G44790.1

    Model type
    Protein coding
    Short Description
    ChaC-like family protein
    Computational Description
    ChaC-like family protein; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT4G31290.1); Has 1621 Blast hits to 1621 proteins in 610 species: Archae - 0; Bacteria - 916; Metazoa - 235; Fungi - 131; Plants - 128; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR