K18043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18043

Determination of introduced cDNA(s)

  • J013134P03 - Rice Full-length cDNAs - Original: J013134P03

    full reading [+] show sequence

    Nucleotide sequence: J013134P03 - full reading
    GCTCCATCCT CTGCTGCACT GGCACGAACG TCGCCGGGAT CCCGACCCGG 
    TTCGTCCCTC CCAAGCCCCA ACCCGAGGAG CAAAGCCGGG GCATGGCAGA
    ACCGTGAATA AGCCGCAACC TCTGTGGCGG TTTCCGACCA ATCCCCTTCT
    TCTCCACCCA ACCAGGTGAG AAATGCGATT GGGCGATGGC TTCGCTTTCC
    TCGCGCTATA AATTCCGCGG GCAACAATAA AGAATTGGAG CGGAGCAGCA
    AGTGGTGGGA GGGAGAATCC GGAATCCCAA AGCAACAGCA GCTAGGGTGA
    AGGGAGGGAG GGAGGGGGAG AGGGAGAACC GCGGCGATGT CGTCGTGGAA
    CTCGGTGGGG ATGGAGGTGC TGTACCAGGT GCTCGGGTGG GTCGCCTTCT
    TCGCTTGGTC CTTCAGCTTC TACCCGCAGG TCTTCCTCAA CTTCAAGCGC
    AAGAGTGTGG TGGGTCTGAA CTTTGATTTT CTGGTGTTGA ACTTGACAAA
    GCACTCATCC TACCTCATAT ACAATGCTGC TCTATTCTTC AGCCCCTTCA
    TCCAGAGACA GTATCATGAG ACATATGGTG ATAAAGAGAT GATTCCTGTC
    GCGGCAAATG ATGTTGCCTT TTCTGTACAC GCGGTTGCCT TGACAGCTTT
    TACCCTTTTT CAAGTATTCA TCTACGAGCG AGGAAACCAG AAAATCTCCA
    AAGTCTGCAT ATCAATCACT GCTATTGTGT GGACAGCTGC TATTGTTTGC
    CTTATTGTAG CTTGGCCAAA AAGTAACTGG CTCTGGCTTA TAGATGTGTT
    CAATTCAATA CAGGTTGGGA TGACAGCAAT CAAATACATT CCTCAGGCCA
    TCATGAACTT CAGGAGGAAG AGTACAATTG GTTGGAGTAT TGGCAATATT
    TTACTTGATC TTACAGGAGG GGTGCTAAAC TTTGGCCAGA TGGGTGTGCA
    ATCAATAGAT CAACACACGC TAGTGAACTT CTATGGAAAT ATTGGGAAAA
    CCCTTCTTTC ATTGGAAGTC GTTTTCTTCG ACATCTTATT CATAATCCAA
    CACTATGTGC TGTACCCTGT CAAACGAGAT GAGAATGGTA AGGCTATCAT
    TTCTGAAAGG GTAGCTCCTC TTATCAGGCC TTCAGACAAG CCTGAAGAAG
    ATAGTGTGTG ATATACCTAT TGTATTTCAC CTTTTTTATG GCCCTGATTA
    CATTCGCTTC AGGGTATAGT CCCAACTATC CATTCATATG AAACAAATGC
    ATTTTTCGTA AAACTAAATT TTGTACATAT TTGTTTACGG ATTAATGTAA
    AGATGTAGAT ACAATAGGCC TTTGATACTA GTCTTAAAAC AATGTTTGTG
    ATTATGTAAG TGTAAGTATA CTT

    Gene models with high sequence identity

    1. AT5G40670.1 [+] show detail - PQ-loop repeat family protein / transmembrane family protein
      E-value: 2e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYSTINOSIN 5.2e-92
    HMMSmart Cystinosin/ERS1p repeat 7.5e-05
    HMMSmart Cystinosin/ERS1p repeat 1.9e-10
    HMMTigr Lysosomal cystine transporter 1.1e-57
    HMMPfam PQ-loop 1.8e-17
    HMMPfam PQ-loop 3.9e-16

    See the detailed result >

    AT5G40670.1

    Model type
    Protein coding
    Short Description
    PQ-loop repeat family protein / transmembrane family protein
    Computational Description
    PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR