K18101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Hormones::Others::increase total Auxin

Original: K18101

Determination of introduced cDNA(s)

J033103A19 - Rice Full-length cDNAs - Original: J033103A19

full reading [+] show sequence

GAAGGCGGAA TCAGTCGAGG GCGAGGCGGC GGCGGCGGCG GCGATGGCGA 
CGGCGAGGAA GGCGCCGCGC ATGGTGGCGA TCTGGGCGGT GGTGGTGGTG 
GTGGTCGCCG CCGATCTGTT CGGAGCGGCG GTCGCGCGGT CGGCGTCGGC 
GCGTCACGCG GTGGGGAAGA AGCAGCGGGA GTTCGACTAC TTCGCGCTGG 
CGCTGCAGTG GCCTGGCACC ATCTGCGCCT CAACCCGCCA CTGCTGCGCC 
ATCAACGGAT GCTGCCGCTC GGAGCCGCTC CAGACGTTCA CGATCCATGG 
GCTGTGGCCG GACTACGACG ACGGGACCTG GCCGGCGTGC TGCCGCCACA 
CCAGCTTCGA CATGGACAAG ATATTGCCCC TGAAGCCGAC GCTTGAGAAG 
TACTGGCCGT CCCTCTACTG CTCATCCTCT TCCACTTGCT TCAGTGGCAA 
GGGGCCCTTC TGGGCTCATG AGTGGGAGAA ACATGGAACA TGCTCATCCC 
CGGTAGTTAA GGATGAATTA GAGTATTTCA CCACTGCTCT TGACCTCTAC 
TTCAAATACA ACGTCACGGA AATGTTGGCA AGTGGTGGTA TCCATGTTTC 
AAATGGTAAA CAATATGCGC TAACTGATGT CATTGATGCC ATCAAATGTG 
CTTTTGGGGC CTCACCGCAA ATTGTTTGCA AGAAGGGCTC AGTTGAAGAA 
CTGAGGTTAT GCTTTGACAA AGATTTGAAG CCCCTTGATT GCCTTACTAC 
TACTGCTACC AATGAAAACG TATCGAAGAA GAAGTATTGC CCTCGATACA 
TCACCCTGCC AACATATGAC CCCATAGTAC ATGCTAATTC TACTCGGGAG 
ATCATAACAG TCGAAAGTGA GGTCTATGGA TATCTTTACA CATCCTAAGA 
TACGATTACC GCGAGCAAGA ATTACATGGC CATGATGAAG CCGGTAGTTC 
AGGGCTCTTA GCTGCTTAAG ACATACTGGG GCCGGCATTG AGGTTCAAGG 
AAATGTATAT CTAGATAACT CGATTATTAC ATTTGTAAGC ACGGCACGCC 
AGAACAACGG AGAATGTGAT TGTGTCTGAA AAATCAATTG CTTTATGTAC 
TATGCAAGGT TGG

Gene models with high sequence identity

AT2G39780.1 [+] show detail - ribonuclease 2
E-value: 1e-69; Score: 260.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Ribonuclease T2, active site	0
PatternScan	Ribonuclease T2, active site	0
HMMPfam	Ribonuclease T2	4e-54
superfamily	Ribonuclease T2	3.5e-65
HMMPanther	RIBONUCLEASE T2	6.7e-59
HMMPanther	Ribonuclease T2	6.7e-59
Gene3D	Ribonuclease T2	3.3e-65

See the detailed result >

AT2G39780.1

Model type: Protein coding
Short Description: ribonuclease 2
Curator Summary: S-like ribonuclease
Computational Description: ribonuclease 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2318 Blast hits to 2317 proteins in 471 species: Archae - 0; Bacteria - 380; Metazoa - 295; Fungi - 231; Plants - 1299; Viruses - 5; Other Eukaryotes - 108 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033115O22 - Rice Full-length cDNAs - Original: J033115O22

full reading [+] show sequence

GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

Gene models with high sequence identity

AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
E-value: 6e-88; Score: 321.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Thioredoxin-like	17.208
Gene3D	Thioredoxin fold	1.3e-54
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	7e-32
HMMPfam	Peroxiredoxin, C-terminal	1.1e-14
superfamily	Thioredoxin-like fold	2.5e-63
HMMPanther	PEROXIREDOXIN 6 RELATED	1.9e-127
HMMPanther	PEROXIREDOXIN	1.9e-127

See the detailed result >

AT1G48130.1

Model type: Protein coding
Short Description: 1-cysteine peroxiredoxin 1
Curator Summary: encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational Description: 1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Link: InterPro Scan - TAIR