K18101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K18101

Determination of introduced cDNA(s)

  • J033103A19 - Rice Full-length cDNAs - Original: J033103A19

    full reading [+] show sequence

    Nucleotide sequence: J033103A19 - full reading
    GAAGGCGGAA TCAGTCGAGG GCGAGGCGGC GGCGGCGGCG GCGATGGCGA 
    CGGCGAGGAA GGCGCCGCGC ATGGTGGCGA TCTGGGCGGT GGTGGTGGTG
    GTGGTCGCCG CCGATCTGTT CGGAGCGGCG GTCGCGCGGT CGGCGTCGGC
    GCGTCACGCG GTGGGGAAGA AGCAGCGGGA GTTCGACTAC TTCGCGCTGG
    CGCTGCAGTG GCCTGGCACC ATCTGCGCCT CAACCCGCCA CTGCTGCGCC
    ATCAACGGAT GCTGCCGCTC GGAGCCGCTC CAGACGTTCA CGATCCATGG
    GCTGTGGCCG GACTACGACG ACGGGACCTG GCCGGCGTGC TGCCGCCACA
    CCAGCTTCGA CATGGACAAG ATATTGCCCC TGAAGCCGAC GCTTGAGAAG
    TACTGGCCGT CCCTCTACTG CTCATCCTCT TCCACTTGCT TCAGTGGCAA
    GGGGCCCTTC TGGGCTCATG AGTGGGAGAA ACATGGAACA TGCTCATCCC
    CGGTAGTTAA GGATGAATTA GAGTATTTCA CCACTGCTCT TGACCTCTAC
    TTCAAATACA ACGTCACGGA AATGTTGGCA AGTGGTGGTA TCCATGTTTC
    AAATGGTAAA CAATATGCGC TAACTGATGT CATTGATGCC ATCAAATGTG
    CTTTTGGGGC CTCACCGCAA ATTGTTTGCA AGAAGGGCTC AGTTGAAGAA
    CTGAGGTTAT GCTTTGACAA AGATTTGAAG CCCCTTGATT GCCTTACTAC
    TACTGCTACC AATGAAAACG TATCGAAGAA GAAGTATTGC CCTCGATACA
    TCACCCTGCC AACATATGAC CCCATAGTAC ATGCTAATTC TACTCGGGAG
    ATCATAACAG TCGAAAGTGA GGTCTATGGA TATCTTTACA CATCCTAAGA
    TACGATTACC GCGAGCAAGA ATTACATGGC CATGATGAAG CCGGTAGTTC
    AGGGCTCTTA GCTGCTTAAG ACATACTGGG GCCGGCATTG AGGTTCAAGG
    AAATGTATAT CTAGATAACT CGATTATTAC ATTTGTAAGC ACGGCACGCC
    AGAACAACGG AGAATGTGAT TGTGTCTGAA AAATCAATTG CTTTATGTAC
    TATGCAAGGT TGG

    Gene models with high sequence identity

    1. AT2G39780.1 [+] show detail - ribonuclease 2
      E-value: 1e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribonuclease T2, active site 0
    PatternScan Ribonuclease T2, active site 0
    HMMPfam Ribonuclease T2 4e-54
    superfamily Ribonuclease T2 3.5e-65
    HMMPanther RIBONUCLEASE T2 6.7e-59
    HMMPanther Ribonuclease T2 6.7e-59
    Gene3D Ribonuclease T2 3.3e-65

    See the detailed result >

    AT2G39780.1

    Model type
    Protein coding
    Short Description
    ribonuclease 2
    Curator Summary
    S-like ribonuclease
    Computational Description
    ribonuclease 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2318 Blast hits to 2317 proteins in 471 species: Archae - 0; Bacteria - 380; Metazoa - 295; Fungi - 231; Plants - 1299; Viruses - 5; Other Eukaryotes - 108 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 0.000000000000011
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR