K18102

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18102

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18102

Determination of introduced cDNA(s)

  • J033086I12 - Rice Full-length cDNAs - Original: J033086I12

    full reading [+] show sequence

    Nucleotide sequence: J033086I12 - full reading
    GACGGTTGAT CGATCAGTAC GAGTACGACG AGAGCTAAGT AAACTTAGCT 
    ATATCGATCG ACCATGGCGT CCAGGACTAG TGCTACTGCC GGCATGCTGC
    TGCTCGCCGC CGCGGCTGCG CTGGTGTGCA GCTCGGCGGC GGCGAGGATG
    CCGCCGTTGG CGAAGGGGTT GTCGTTGGGC TACTACGACG CGAGTTGCCC
    GCAGGCGGAG GCCGTCGTGT TCGAGTTCCT GCAGGACGCC ATCGCCAAGG
    ACGTCGGCCT CGCCGCGGCG CTGATCCGGC TCCACTTCCA CGACTGCTTC
    GTCCAGGGCT GCGACGCCTC CATCCTGCTC GACAGCACAC CCACCGAGAA
    GAGCGAGAAG TTGGCGCCGC CGAACAAGAC CCTCCGCAAG TCGGCGTTCG
    ACGCCATCGA CGATCTCCGC GACCTGCTCG ACAGGGAATG CGGCGACACC
    GTCGTGTCCT GCTCCGACAT CGTCACCCTC GCCGCCCGCG ACTCCGTCCT
    CCTCGCCGGT GGCCCGTGGT ACGATGTTCC CCTCGGCCGC CACGACGGCT
    CCAGTTTCGC GTCTGAGGAC GCCGTCCTGA GCGCGCTCCC GTCGCCGGAC
    TCCAACGTCA CCACGCTCCT CGAAGCGCTG GGCAAGCTCA AGCTCGACGC
    CCACGACCTC GTCGCCCTCT CCGGCGCGCA CACCGTCGGC ATCGCGCACT
    GCACTTCCTT CGACAAGCGC CTCTTCCCTC AAGTCGACCC CACCATGGAC
    AAGTGGTTCG CCGGCCACCT CAAGGTCACC TGCCCGGTGC TGAACACCAA
    CGACACCACC GTCAACGACA TCCGGACGCC CAACACCTTC GACAACAAGT
    ACTACGTCGA CCTGCAAAAC CGCCAGGGCC TCTTCACCTC CGACCAGGGC
    CTCTTCTTCA ACGCAACCAC CAAGCCGATC GTCACCAAGT TCGCCGTCGA
    CCAGTCGGCC TTCTTCGACC AGTACGTCTA CTCCGTCGTC AAGATGGGCA
    TGATCGAGGT GCTCACCGGC TCGCAGGGGC AGATCCGCAA GCGCTGTTCG
    GTGTCCAACG CCGCCGCCGC CGGCGACCGT GCTTGGTCCG TCGTGGAGAC
    CGTCGCTGAG GCCGCCGAGA GCTTGGTGCT GTAGGGTGCT AACAAGGATG
    GCTAGTTTAA TTAAGCTTAT TTCCTTGATA AATATTTTGT TGCTTCCAAA
    TGTCATGAGT ATGTACACTT GCGTGTATTT TGTAGCTTAT TTTTTATTTG
    CAAATAAAGT TGAATATATG AAAACTATTT AAATCC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 3e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 3.1e-105
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    HMMPfam Haem peroxidase, plant/fungal/bacterial 7.8e-70
    Gene3D no description 2.9e-50
    ProfileScan Haem peroxidase, plant/fungal/bacterial 68.715
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Plant peroxidase 1.4e-51
    FPrintScan Haem peroxidase, plant/fungal/bacterial 6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 6e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 6e-33

    See the detailed result >

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR