K18106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18106

Determination of introduced cDNA(s)

  • J023072A02 - Rice Full-length cDNAs - Original: J023072A02

    full reading [+] show sequence

    Nucleotide sequence: J023072A02 - full reading
    TAGTGTTCTC CATCAGTAGC AGTATCAGAC AACACTTCTT CCACTCACTC 
    AATAATAAGC AGCAGCAACA CTACTCTAAT CAATACTCAA TTCTACACTT
    GTACTACTAC ATCAGCAGCA GTGGACTAGC TGGAGGAAGA ATCCATTGTT
    CATAAGCATG GGGCTCATCA GGCGGCTGAT CCCATCCGGA TTCCCTGCAA
    TTCTCAGAAG GAGGATGAGG GGCCGGGCGG CGGTGTTCGC GGCGGTGCTG
    GTCGTGTTCC TGGTGGCGTG CACCGCCGCG GCGGCGGCGG CGGCGATTAC
    CATATCGAGG AAGCACCAGC ACAGGCCGGC GTCCGGGGCG GCGGCGAAGG
    CGGCGTGCGA CGTGTTCGCG GCGGGGAGCT GGGTGGTGGA CGAGTCGTAC
    CCGCTCTACG ACTCGGCGAC CTGCCCCTTC ATCCGCGCCG AGTTCGACTG
    CCGCCGGTAC GGCCGCCCCG ACAAGGAGTA CCTCAAGTAC CGGTGGCAGC
    CCAGCCCGCC GTGCTCCACG CCCAGGTTCG ACGGGGTGGC GTTGCTGAGG
    ATGTGGAGCG GGAAGAAGGT GATGTTCGTG GGGGACTCGC TGGCGCTGAA
    CCAGTACGAG TCGCTGCTGT GCATGCTGCA CGCCGCCGCG CCCAACGCCC
    GGACCACCGT CACGCCGGCG TCGGGGAAGG TCGATCCCCT CACCACCGCC
    CGCTTCGAGG AGTTCAACGT GACGATCGTG TACTACCTGA CGCACTACCT
    GGTGGACATT GTCAACGAGA AGGCCGGGCG AGTACTCAAG CTGGACGCCA
    TCGACCAGGC ACGCAACTGG CTCAGCGCCG ACGTGCTCGT CTTCGATTCC
    TGGCACTGGT GGCCGCGCTC CGGCCCGACC CAACCATGGG ACTACATCCA
    GGAGGGCAAC ACGGTGGTGA AGGACATGGA CAGGACGGAG GCGTTCAGCA
    AGGCGCTCAA CACCTGGGCT AGATGGGTCG ACGCCAACCT CCTCCAGGCC
    AACACCAGAG TCTTCTTCCA GGGCATCTCC CCCTCTCACT ACAGGGGCCA
    AGATTGGGGC GACACGGCGA GTGCGACGTG CATGGGGCAG ACGCGGCCGG
    TGAACGGCAC GGCGTACCCC GGGGGGCCGA TCCCGCAGCA GGCGGTGCTG
    AGGAGCGCCC TCGCCGGCAT GGCGAAGCCG GTGTACCTGC TGGACTTCAC
    CTACCTGTCG CAGCTGAGGA AGGACGCGCA CCCGACCAAG TACAACGGCG
    GCATCTTCGG CGACGACTGC ACCCACTGGT GCGTCGCCGG CCTCCCGGAT
    ACCTGGAACG TCCTCTTCTA CGCCGCGCTC ACCGGCCAGC ACTGATGGCC
    GGCTGCTGAC CTGCTGTCAT CACGGCCGGT GATATGATTG AGATAGGATA
    TAGTGGAAAT AATTAATCAA CAGGAAAAAA GAATTATAGA TACAGATTGA
    TTTTATATAG GTCTATATGG AAAGAATTTT TCTCGAAAAA AAAGAAACAG
    AAGATTATTG TTACCAAAGT GACAGAAGAA ATGCCTGATT CTCTCTCAGA
    AATGGGGGTG AATTAAAGAT GCTGTAATTG GTTGGCAAAG AAGGATAAGA
    AAGAATTAAT TGTTCTCATG TGGTTATAAA GATAAACAGA TTGTTTTGGC
    AGTT

    Gene models with high sequence identity

    1. AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
      E-value: 2e-109; Score: 393.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G29050.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 38
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR