K18106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18106

Determination of introduced cDNA(s)

J023072A02 - Rice Full-length cDNAs - Original: J023072A02

full reading [+] show sequence

TAGTGTTCTC CATCAGTAGC AGTATCAGAC AACACTTCTT CCACTCACTC 
AATAATAAGC AGCAGCAACA CTACTCTAAT CAATACTCAA TTCTACACTT 
GTACTACTAC ATCAGCAGCA GTGGACTAGC TGGAGGAAGA ATCCATTGTT 
CATAAGCATG GGGCTCATCA GGCGGCTGAT CCCATCCGGA TTCCCTGCAA 
TTCTCAGAAG GAGGATGAGG GGCCGGGCGG CGGTGTTCGC GGCGGTGCTG 
GTCGTGTTCC TGGTGGCGTG CACCGCCGCG GCGGCGGCGG CGGCGATTAC 
CATATCGAGG AAGCACCAGC ACAGGCCGGC GTCCGGGGCG GCGGCGAAGG 
CGGCGTGCGA CGTGTTCGCG GCGGGGAGCT GGGTGGTGGA CGAGTCGTAC 
CCGCTCTACG ACTCGGCGAC CTGCCCCTTC ATCCGCGCCG AGTTCGACTG 
CCGCCGGTAC GGCCGCCCCG ACAAGGAGTA CCTCAAGTAC CGGTGGCAGC 
CCAGCCCGCC GTGCTCCACG CCCAGGTTCG ACGGGGTGGC GTTGCTGAGG 
ATGTGGAGCG GGAAGAAGGT GATGTTCGTG GGGGACTCGC TGGCGCTGAA 
CCAGTACGAG TCGCTGCTGT GCATGCTGCA CGCCGCCGCG CCCAACGCCC 
GGACCACCGT CACGCCGGCG TCGGGGAAGG TCGATCCCCT CACCACCGCC 
CGCTTCGAGG AGTTCAACGT GACGATCGTG TACTACCTGA CGCACTACCT 
GGTGGACATT GTCAACGAGA AGGCCGGGCG AGTACTCAAG CTGGACGCCA 
TCGACCAGGC ACGCAACTGG CTCAGCGCCG ACGTGCTCGT CTTCGATTCC 
TGGCACTGGT GGCCGCGCTC CGGCCCGACC CAACCATGGG ACTACATCCA 
GGAGGGCAAC ACGGTGGTGA AGGACATGGA CAGGACGGAG GCGTTCAGCA 
AGGCGCTCAA CACCTGGGCT AGATGGGTCG ACGCCAACCT CCTCCAGGCC 
AACACCAGAG TCTTCTTCCA GGGCATCTCC CCCTCTCACT ACAGGGGCCA 
AGATTGGGGC GACACGGCGA GTGCGACGTG CATGGGGCAG ACGCGGCCGG 
TGAACGGCAC GGCGTACCCC GGGGGGCCGA TCCCGCAGCA GGCGGTGCTG 
AGGAGCGCCC TCGCCGGCAT GGCGAAGCCG GTGTACCTGC TGGACTTCAC 
CTACCTGTCG CAGCTGAGGA AGGACGCGCA CCCGACCAAG TACAACGGCG 
GCATCTTCGG CGACGACTGC ACCCACTGGT GCGTCGCCGG CCTCCCGGAT 
ACCTGGAACG TCCTCTTCTA CGCCGCGCTC ACCGGCCAGC ACTGATGGCC 
GGCTGCTGAC CTGCTGTCAT CACGGCCGGT GATATGATTG AGATAGGATA 
TAGTGGAAAT AATTAATCAA CAGGAAAAAA GAATTATAGA TACAGATTGA 
TTTTATATAG GTCTATATGG AAAGAATTTT TCTCGAAAAA AAAGAAACAG 
AAGATTATTG TTACCAAAGT GACAGAAGAA ATGCCTGATT CTCTCTCAGA 
AATGGGGGTG AATTAAAGAT GCTGTAATTG GTTGGCAAAG AAGGATAAGA 
AAGAATTAAT TGTTCTCATG TGGTTATAAA GATAAACAGA TTGTTTTGGC 
AGTT

Gene models with high sequence identity

AT1G29050.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 38
E-value: 2e-109; Score: 393.00

InterPro Scan Digest

See the detailed result >

AT1G29050.1

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 38
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 38 (TBL38); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 37 (TAIR:AT2G34070.1); Has 1347 Blast hits to 1329 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1344; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR