K18123

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18123

Determination of introduced cDNA(s)

  • J013002P09 - Rice Full-length cDNAs - Original: J013002P09

    full reading [+] show sequence

    Nucleotide sequence: J013002P09 - full reading
    TGTCAGAGAG CTGAGGGAGC CATGGCCATG GAGAAGAGCC GGGTCCTCGT 
    CGTCGGCGGC ACCGGCTTCG TCGGTCGGCG GGTCGTGGCG GCGAGCTTGG
    CGGCGGGCCA CCCGACCTAC GTCCTGCTCC GGCCGGAGAT CGGCCTCGAC
    ATCGACAAGC TCCAGATGCT GCTGGCCTTC AAGGCGCGGG GCGCGCGGCT
    CCTCGAGGCG TCGCTCGACG ACCACGACGG CCTCGTCGCC GCCGTCCGGC
    AGGCGGACGT CGTCGTCTCC GCCATGTCCG GCGTCCACTT CCGCAGCCAC
    AACCTCATGC TCCAGCTCAA GCTCGTCGAG GCCATCAAAG ATGCTGGAAA
    TGTCAAGCGA TTCCTGCCAT CTGAATTCGG CATGGATCCA TCAAGGATGG
    GGGACGCTCT AGAACCTGGG AGGGTTTCAT TTGATGAGAA GATGGTGATA
    AGGAGAGCAA TTGAGGATGC AAACATCCCC CACACATATG TTTCTGCCAA
    TTGCTTTGCA GCTTACTTCT GTCCTAACCT CTGTCAGATG AAAACTCTCC
    TCCCTCCCAA AGAGAGAGTT GGTGTGTATG GAGATGGCAA CGTCAAGGTG
    TTTTTCGTGG ACGAAAATGA TGTGGGAACA TATGCAATAn AATCAATCGA
    TGATCCTCGC ACCTTGAACA AGACAATATA CATAAGGCCT CAAGATAACT
    GTCTCACTCA GAACGAGTTG ATCTCAAAGT GGGAAACACT CACTGGGAAA
    AGTCTTGAGA AATTCCACAT ACCTGGTGAT GAATTTTTGG CTTCTATGAA
    AGATTTGGAT TTTGCTAGTC AAGTAGGAAT AGGACATTAT TACCACATCT
    TTTACGAGGG CTGCCTGGCA AACTTCGAGA TTGGTGACAA TGGTGCCGAG
    GCAACTCAGC TCTACCCAGA GGTTCAGTAC ACCCGCATGG ATGAGTACCT
    GAAACGCTAT ATCTAACCGG TTCAAATTTA AAGCATCTGT TTGTCAAATT
    TAAAGATTGT AATCCGCAAA TGAGCATCCC TGGTCGATCT TCCCCTACCA
    GAATTGTTCA ACGACAATAT GCCTGCTCGA ATTTATGGTA CTAGTAGTCT
    AGTACATCCC CTCTTGTTTG TTGACTCTGT TGTACTATCA AGTTGGATGG
    GTGGAAAGTT CAAACGATGG TTAGCATGTT CATGTTCAGA CCGGTATTTT
    GG

    Gene models with high sequence identity

    1. AT1G32100.1 [+] show detail - pinoresinol reductase 1
      E-value: 1e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.8e-59
    HMMPfam NmrA 2.2e-74
    Gene3D NAD(P)-binding domain 5.9e-19
    HMMPanther NITROGEN METABOLIC REGULATION PROTEIN NMR-REL 0.000000013

    See the detailed result >

    AT1G32100.1

    Model type
    Protein coding
    Short Description
    pinoresinol reductase 1
    Curator Summary
    Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
    Computational Description
    pinoresinol reductase 1 (PRR1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 2 (TAIR:AT4G13660.1); Has 2085 Blast hits to 2085 proteins in 479 species: Archae - 27; Bacteria - 779; Metazoa - 2; Fungi - 496; Plants - 600; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR