K18126

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18126

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18126

Determination of introduced cDNA(s)

  • J013026F02 - Rice Full-length cDNAs - Original: J013026F02

    full reading [+] show sequence

    Nucleotide sequence: J013026F02 - full reading
    GAAGAAGAGC ATCAGCTTCC AACTCGAGCT CTTCTTCTAC TTAAAAGAAA 
    AAAAACACGC ATATCTAGTA GTACTGTTCT AGTGTTCTTG TACTTCTATT
    CGTGTGCTAC TACTGCATCT GTGAGTCTGT GTGACTGTAC ACATCTGTAA
    TGGAGTGCGA AACCGGGCTT GTTCGTTCCC TGAACGGCGA CGGGCTGTGC
    ATGTCGTCGG TGTCGGCGCC GCCGCGGGCC GACCCACTGA ACTGGGGGAA
    GGCGGCGGAC GAGCTGGCGG GGAGCCACCT CGACGAGGTG AAGCGGATGG
    TGGAGGACTT CCGCCAGCCG CTGGTGAAGA TCGAGGGCGC CAGCCTGACG
    ATCGCGCAGG TGGCCGCCGT GGCCGCCGGC GCCGGCGACG CCAGGGTGGA
    GCTCGACGAG TCCGCCCGCG GCCGCGTCAA GGCCAGCAGC GACTGGGTCA
    TGAACAGCAT GATGAACGGC ACCGACAGCT ACGGCGTCAC CACCGGCTTC
    GGCGCCACCT CCCACCGCCG CACCAAGGAG GGCGGCGCGC TCCAGAGGGA
    GCTCATCAGA TTCCTCAATG CCGGCGCCTT CGGCACCGGC ACCGACGGCC
    ACGTTCTGCC GGCGGAGGCG ACGCGCGCGG CGATGCTCGT CCGCATCAAC
    ACCCTCCTCC AGGGTTACTC CGGCATCCGC TTCGAGATCC TCGAGGCCAT
    CACCAAGCTG CTCAATGCCA ACGTCACGCC GTGCCTGCCG CTCCGGGGCA
    CCATCACCGC CTCCGGTGAC TTGGTCCCAC TGTCCTACAT TGCCGGCCTC
    ATCACCGGCC GCCAGAACTC CGTGGCCGTC GCCCCGGATG GCCGCAAGGT
    GACCGCCGCC GAGGCATTCA AGATTGCCGG CATTGAGCAC GGCTTCTTCG
    AGTTGCAGCC TAAGGAAGGT CTTGCCATGG TGAACGGCAC TGCCGTCGGC
    TCTGGCCTTG CATCGACCGT GCTCTTTGAG GCCAACGTCC TTGCCATCCT
    CGCCGAGGTC CTGTCCGCCG TGTTCTGTGA GGTCATGACC GGCAAGCCGG
    AGTACACCGA CCACCTGACA CACAAGCTGA AGCACCACCC TGGACAGATC
    GAGGCTGCCG CCATCATGGA GCACATCTTG GAAGGCAGCT CGTACATGAA
    GCTGGCGAAG AAGCTCGGCG AGCTCGACCC GTTGATGAAG CCGAAGCAGG
    ACAGGTACGC GCTCCGCACG TCGCCGCAGT GGCTCGGCCC ACAGATCGAG
    GTCATCCGCT TCGCCACCAA GTCGATCGAG CGCGAGATCA ACTCCGTCAA
    CGACAACCCG CTGATCGATG TCTCCCGTGG CAAGGCGCTT CACGGTGGCA
    ACTTCCAGGG CACGCCCATC GGCGTGTCCA TGGACAACAC CCGCCTCGCC
    CTCGCTGCCA TCGGCAAGCT CATGTTCGCG CAGTTCTCTG AGCTCGTGAA
    CGACTTCTAC AACAACGGGC TTCCTTCCAA CCTGTCCGGT GGACGCAACC
    CCAGCTTGGA CTATGGGTTC AAGGGCGCGG AGATCGCCAT GGCGTCGTAC
    TGCTCCGAGC TCCAGTTCTT GGGCAACCCG GTGACCAACC ATGTCCAGAG
    CGCGGAGCAG CACAACCAGG ACGTGAACTC GCTTGGTCTC ATCTCCTCCA
    GGAAGACCGC CGAGGCCATC GACATCCTGA AGCTCATGTC CTCCACGTTC
    TTGATCGCCC TGTGCCAAGC CATCGACCTG CGCCACCTCG AGGAGAACAT
    GAAGACCGCG GTGAAGAACT GCGTGATGCA GGTGGCCAAG AAATCCCTGA
    GCATGAACCA CATGGGCGGC CTCCACATCG CTCGCTTCTG CGAGAAGGAC
    CTGCTCACCG CGATCGACCG CGAGGCCGTG TTCGCCTACG CCGACGACCC
    CTGCAGCGCC AACTACCCGT TGATGCAGAA GCTCCGCGCG GTGCTCATCG
    AGCACGCGCT CGCCAACGGC GACGCCGAGC GCGTCCTGGA GACCTCCATC
    TTCGCCAAGG TGGCCGAGTT CGAGCAGCAC GTCCGCGCCG CGCTGCCCAA
    GGAGGTGGAG GCCGCCCGCG CCGCCGTCGA GAACGGCACC CCGCTCGTCC
    CCAACCGGAT CAAGGAGTGC CGCTCGTACC CGCTCTACCG GTTCGTGCGC
    GAGGAGGTCG GCACCGAGTA CCTCACCGGC GAGAAGACGC GGTCGCCCGG
    CGAGGAGCTG AACAAGGTGC TCGTCGCCAT CAACGAGCGC AAGCACATCG
    ACCCGCTGCT CGAATGCCTC AAGGAATGGA ATGGCGCGCC ACTGCCACTC
    TGCTGAACAG AAATGGAATA CTAAAAAAAA TGCAAAACAA GAAGACGTAT
    AGCAACACAA AACTGAAAGA TAGAGAGCAT TTCGAGAGTG TGAATGTTTT
    CTACTATGTC TAGATGAACA TGGTGATGAT ACTATTTTAC GGTTCTTTGT
    AGTTAACTTG ATGTTACTGT TGCTGTTTCA GCTTCTGCGG TTGCCATAAC
    CTGCAGTTCC GCATGGCCTG GCACGCAGCT TTCTGAAACT TTTGGTGCTG
    TAAATTTGTA TAAGTTGGGG GACTAAAGTA AATTATTTTG TTTT

    Gene models with high sequence identity

    1. AT2G37040.1 [+] show detail - PHE ammonia lyase 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phenylalanine/histidine ammonia-lyase 2.2e-175
    HMMTigr Phenylalanine ammonia-lyase 0
    Gene3D no description 1.8e-81
    Gene3D no description 8.4e-113
    PatternScan Phenylalanine/histidine ammonia-lyases, active site 0
    superfamily L-Aspartase-like 6.4e-166

    See the detailed result >

    AT2G37040.1

    Model type
    Protein coding
    Short Description
    PHE ammonia lyase 1
    Curator Summary
    Encodes PAL1, a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
    Computational Description
    PHE ammonia lyase 1 (PAL1); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: in 10 processes; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 2 (TAIR:AT3G53260.1); Has 4888 Blast hits to 4867 proteins in 1414 species: Archae - 40; Bacteria - 2973; Metazoa - 79; Fungi - 127; Plants - 1176; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR