K18135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18135

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K18135

Determination of introduced cDNA(s)

  • J023049O09 - Rice Full-length cDNAs - Original: J023049O09

    full reading [+] show sequence

    Nucleotide sequence: J023049O09 - full reading 
    GTCGGCGGCG CCGGCTCCGG CGGTTTCGCG AGATGGTGCG GCGGCGTGAG 
    GCGGCGTTGC GTGGGTGACC CGGAGACTCC AACCAAAACG CTCCGGCCGA 
    TCGAGAGCCT CTCCCGGATC TGACGTCAGA TGAGGCCGTA CCGTAACCAC 
    CTCGCTTTCT ATCACACAAA CGGCTCGTTG GATTGGGGGA GTCTCCTCTG 
    CGCGACGGAC ATGGCCTCCT CGCTCGTCTC GCGCACCCAC CTCACTCCGC 
    GCCCCGCCGC CGCCGCCTCG ACGGCCTCTC CTTGCAGCGC CCGCTTCGCG 
    GTCCGGCGGC GCCGTGGCCT CGTCGGCGGT GTGCGGTGCC AGGCGCAGGC 
    GAGCGACATG GACGGCCACT ACATGCGGCG GTGCGTGGAG CTGGCGCGCA 
    AGGCGGCCGG ACACACCAGC CCTAACCCCA TGGTCGGCTG TGTCGTTGTC 
    CGCGACGGCC GCGTCGTCGG CGAGGGATTC CATCCCAAAG CCGGCCAGCC 
    ACACGCCGAG GTGTTTGCTC TGAGAGATGC TGGGGATTTA GCAGAGAATG 
    CAACAGCCTA TGTGAGCTTA GAGCCCTGCA ACCATTACGG GCGGACACCT 
    CCCTGCACTG AAGCACTCAT CAATGCCAAA GTTAAAGATG TTGTGGTGGG 
    GATGACTGAC CCAAATCCTA TTGTGGCATC CAAGGGGATT GAAAGGCTCA 
    GAAGCGCCGG GATAGATGTG AGGTTGTGCG TGGATGAAGA AGCGTCATGC 
    CGCAAGCTAA ATGAGGCTTA CATCCATCGC ATGCTTACTG GGAAGGCCTT 
    TGCAACTTTA AGAACTACAC TCTCGATGAA TGGAGTTGTC ATCAATCAGA 
    TTGGGAGTGG AGCTGATCAA CCAGAAGGAT ACTACTCGCA GTTATTGAAA 
    GAATACGATG GAGTAATAAT TTCAAGCAAT TTTGCCAAGA CAAATACCTT 
    GCCTGTATCC CGTGAAGCTG GTGCGAAGCA GCCTCTTTAT ATCATCATAG 
    CGCAGTGCGA AAATTCCCAA TTAAACATTC CGTTTCTCAA AGAAGAGCGT 
    GCAGCCGAGG CAGTAGTTCT GTCGGATAGT CCTATCACTG TGGAGCCAGC 
    AGGAGTTGAT GTTTTAGTCC TTGATCAGAT GAACCTGGAT GCCATTCTTC 
    AACTTCTTGC ACAACGAGGG CTATGTAGTG TGCTGGTGGA TTTCAGGGAG 
    GCTGGAGGAG GCATTGCATC ACTTCTGAAC AATTTTCAGG ATGACAAGCT 
    GGTACAGAAG GTTGTTGTGG AGCTCCTGCC TGTCTGGGCG GTCAGCAAAG 
    GGCCGAGCGA CCTGGCGTTT GGTGGGAGCC AGTCATTTCC ACTGAAGGAT 
    GTGGAGCACA GTGAGGTAAA TGGATCCGTG CTGCTTCAGG GCTATGTGTA 
    ACAAACTTTT TTGGTTCGAG GTTGATCCTG CCCTGAGTAG CGCTGCGTAT 
    TTTTACCTCT CACTCTCTCT CGTTCTGGCT CTGGTAAACT GTCCGTCATG 
    TAAACTTACC TGAATCTGCA GTCAATGCGG TGGTGCTCCT AGACAGGGAT 
    CTGGTTCTTC TGATTTTTAC AGTATCATGC AATAAATCTA TGAGAGAACT 
    GCG

    Gene models with high sequence identity

    1. AT4G20960.1 [+] show detail - Cytidine/deoxycytidylate deaminase family protein
      E-value: 3e-89; Score: 326.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Riboflavin biosynthesis protein RibD 2.8e-62
    HMMPanther CYTOSINE DEAMINASE 2.8e-62
    PatternScan APOBEC/CMP deaminase, zinc-binding 0
    Gene3D no description 7.1e-33
    HMMPfam CMP/dCMP deaminase, zinc-binding 1.1e-19
    HMMTigr Riboflavin biosynthesis protein RibD 3.9e-59
    superfamily Cytidine deaminase-like 1.4e-38

    See the detailed result >

    AT4G20960.1

    Model type
    Protein coding
    Short Description
    Cytidine/deoxycytidylate deaminase family protein
    Curator Summary
    encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
    Computational Description
    Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR