K18202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18202

Determination of introduced cDNA(s)

J023095M01 - Rice Full-length cDNAs - Original: J023095M01

full reading [+] show sequence

CCCAAACCGC GTGGGTCCCA CCGGGCTCCG TCGCCACGTA CGCGGCCGGC 
TCTCCCTATA CAAGCGCCAC GTCGCCGGCG AGCCGCCGCC CCTCCACCGT 
CCCCGGCGGC GTATATTCCC CCCCGTGGCG CGCTCCCATG GCTTCCTACT 
GCTACTACGG CAACACCTCC AACCCTAACC CTAACCCTAA CCCTAGCCCT 
GCTCCCTCCG CTCCGCCGCT CTACCCCACG CTCAGCATGG CCGATCTCGC 
GCCCGTCCAG ATAGGCCCCT CCCCCCCCTC GTCGCCGATG TCCCCGGCGT 
CTCCGGCCAC CCCCGTCGAC GCCTACGCCA ATGCCCCGCC ACCGTCGGAG 
GACGTCCTGC TCCGGATCCC GGGGGCGCAG CTCCACCTCA TCGACCGCCA 
CCGCAGCTAC CCGCTCGCCG CCGGCGACCT CTCGCTGCTC CGCATCCGCT 
CCGGCGACAC CTCCCTCGCC GCCATCGCGC TCCTCCACCC CATCCAGTGG 
CCGCTCGCGC GCGACGTCGC CTCGGTGAAG CTCGACCCCT GCCACTATTC 
CTTCTCCCTC ACCGTGCCGC CCTCCGCCGA CGACCCCAAC CCCGGCCCTC 
TCCATTACGG CCTCACGCTC TCCCACCCCG ACCCGCGCCT CGATGGCATC 
CTCGCCACGT ACACCAGCTT CTCCGTCCAG TCCGTGGTCG GCGGCGAGGC 
GTTGGCGAGC AAGGTTCGCG ACGAGGTGGA GGCGGCGGCG TACTGGACGG 
CGGTGGCGCC CAATGTGGAG GAGTACGGCG GGAAGGTGGC AAATGCGATC 
GCGACGGGGG CCGGGCACCT GGCCAAGGGG ATTCTGTGGT GCAGTGAACT 
GACGGTGGAC AGGCTCCGGT GGGGAAACGA GGTCCTCAAG AGGAGGATGC 
AGCCCGGCGA CGCCGACGCC GAGGTCAGCC CCGAGATGTT GAGGCGGATC 
AAAAGGGTCA AGATGGTGAC AAAAATGTCT GAGAAAGTGG CAACTGGAAT 
ACTATCCGGA GTTGTAAAGG TTACTGGCTA TTTTACAAAC TCAATAGCTA 
ACTCAAAAGC TGGCAAGAAG TTCTTTAATT TGTTACCTGG AGAGATTGTT 
CTTGCTTCGC TTGATGGATT CGGGAAGATT TGCGACGCAG TCGAAGTGGC 
TGGAACGAAT GTTCTGTCCA CATCATCAAC TGTGACTACC GGTCTTGTAT 
CCCACAAATA TGGGGAGAAA GCCGCGGCTG CGACCAATGA AGGGATGGAT 
GCAGCAGGCC ACGCAATCGG GACAGCATGG GCAGTGTTCA AGATTCGGCA 
GGCCTTGAAC CCGAAGAGCG TCCTAAAGCC AACCTCACTC GCCAAGTCTA 
CCATCAAAGC AGCAGCTGCT GACTATCGTG CAAAGCAAAA GAAATAGTTC 
GTCCTCAACG ATCAACCCAG TGTTGGAACG TTCCTGACTA ATAGAAGCTC 
TGCCCCAATC CATCCCAGCT AGTTTTTGCA GATGTCTTCT CTTGTTTTCT 
TTTTTTCACG AGTCATGGGT GTGCTGCACT ACTGCTACTG TTGCTTGTAA 
TATATGTGCT GAAAAACCAA AAGCAACTCC TGAACGCTGA TGATGTACTA 
CCACTTTTGT GCTGAATGAT GCAATGTACG GAAATCTGTG GTGTT

Gene models with high sequence identity

AT2G17840.1 [+] show detail - Senescence/dehydration-associated protein-related
E-value: 4e-96; Score: 349.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Senescence/spartin-associated	3.8e-153
HMMPanther	gb def: Putative senescence-associated protei	0
HMMPanther	FAMILY NOT NAMED	0

See the detailed result >

AT2G17840.1

Model type: Protein coding
Short Description: Senescence/dehydration-associated protein-related
Curator Summary: Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.
Computational Description: EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR