K18205

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18205

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18205

Determination of introduced cDNA(s)

  • J033135H09 - Rice Full-length cDNAs - Original: J033135H09

    full reading [+] show sequence

    Nucleotide sequence: J033135H09 - full reading 
    GACCATCCTT AACCGAGAAG CATAGCTCGC TTCCACGCAA GATTAAAAGC 
    TGCCCCTCTT GCTGCTGCAG ACTGCAGTCC TGCAAGATCA GCGCCTGAAG 
    CAAGAAGCGA AGAATCAAAC GAGAGCCTAG CAGCGTAGCA GATCGATCGA 
    TCGATCGATA TTATGGAGGC GCGAGGAAGC AGAGGAATGC GGCTGTGGCT 
    CCTGTCCGTG GCGGTGATGG CCATGGCGAT GGCGACGAGG TCGCAGGCGC 
    AGCTGCAGGT CGGGTACTAC GACACGCTGT GCCCGGCGGC GGAGATCATC 
    GTGCAGGAGG AGGTCAGCAA GGCGGTGTCC GGGAACCCCG GCATGGCCGC 
    CGGCCTCGTC CGTCTCCACT TCCACGACTG CTTCGTCAGG GGGTGCGACG 
    CGTCGGTGCT GCTGGACTCG ACGCAGGGGA ACAGGGCGGA GAAGGACGCG 
    CCCCCGAACA CGAGCCTCCG CGGCTTCGAG GTCATCGACA GCGCCAAGTC 
    CCGCCTCGAG ACGGCCTGCT TCGGCGTCGT CTCCTGCGCC GACGTCCTCG 
    CCTTCGCCGC CCGGGACGCC CTCGCGCTGG TGGGAGGGAA CGCGTACCAG 
    GTGCCGGGGG GGAGGAGAGA CGGCAACGTG TCGGTGGCGC AGGAGACGAA 
    CGGGAACCTG CCGCCGCCGT CGGCGAACGT GGCGCAGCTG AACCAGATGT 
    TCGGCGCCAA GGGGCTCACC CAGGCGGAAA TGGTGGCACT GTCGGGCGCG 
    CACACCATCG GCGTGTCGCA CTGCAGCTCC TTCAGCAACC GCCTCTACTC 
    GTCGGGCCCC AACGCCGGGC AGGACCCCAG CATGGACCCC AGCTACGTCG 
    CCGCGCTGAC GACGCAGTGC CCGCAGCAGC AGGGGCAGCC CGCGGCGGGG 
    ATGGTGCCCA TGGACGCCGT CACGCCCAAC GCCTTTGACA CCAACTACTA 
    CGCCGCCATT GTCGCTAACC GGGGATTGCT CAGCTCCGAC CAGGCGCTCC 
    TCGCCGACCA GACCACCGCC GCGCAGGTCG TCGGCTACAC CAACAACCCG 
    GACTCGTTCC AGACCGACTT CGCCGCCGCC ATGGTCAAGA TGGGCTCCAT 
    CGGCGTGCTC ACCGGCAACG CCGGCACCAT CAGGACAAAC TGCAGGGTGG 
    CCAGCTGATC GATCGACCTA AGCATGATGT ATAGCTCGTG GCAGGCTTGT 
    GTGAGTTGGG ATTGTGATGA GATTAAATTG AAAATTGTAC GTACGACGAC 
    GTAGCTAGCT AGATAGAGTG TTGTAAACTT ATTTGTTTGA TCATTCATTT 
    GGTCTCTCTG TATTACGTGC TAGCTAGCTC AATTAGCTTG CTCGTGCGTC 
    CCTTCTCCCC TCTTCCCGTA GATTATTTTA CTCTGCACTC TGTACTTCTC 
    TGTGACATTA TAGTGACAAT ATAGTTTTAT TGTTCCATCT TTTAACCTCT 
    GCATGTACAT GCTGCGAATA GAAAGCCAGA ATAAGAAACC TATTTAAGCT 
    CCAACC

    Gene models with high sequence identity

    1. AT1G05260.1 [+] show detail - Peroxidase superfamily protein
      E-value: 6e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1e-77
    superfamily Haem peroxidase 2.7e-110
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    Gene3D no description 1e-58
    ProfileScan Haem peroxidase, plant/fungal/bacterial 76.642
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29

    See the detailed result >

    AT1G05260.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
    Computational Description
    RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR