K18211

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18211

Determination of introduced cDNA(s)

  • J013000F02 - Rice Full-length cDNAs - Original: J013000F02

    full reading [+] show sequence

    Nucleotide sequence: J013000F02 - full reading 
    GAGGCGCTTC TCCCCCCCGA AGCTCGCGCG CACGCACGCA CGCTGGGCGC 
    TTCTTCTTCC CCCGCGCATC GTCCGAAATC CTCCGGATTT TCTGAGGAAT 
    CCCCCCGAAT TTCCTTGCGT CCCATCATGG CCTCCTCAGA TGTCTCCGTT 
    GATGTTCGGC CAGAGTTTAA CTCTTTTGAT CATTTGAGAA GCATACGATA 
    TATTGCAACA GATAGACCAT GGCTGACGTT ATATGGAATA AGAGTTCAAC 
    CTGTAACACC ATTCAGCAGT TTGAGCAGTA GACCTGATCT GGCACTCATT 
    CATCAATGCC TACCTGATGA GCTGCTTTTT GAGATCTTTG CAAGGATGAG 
    TCCATATTCT TTAGGGAGGG CTGCTTGTGT GTGTCGCAAG TGGAAATATA 
    CTGTACGCAA TCCGACTTTG TGGCGGAATG CTTGCCTCAA AACTTGGCAG 
    AGGACTGGAA TGGAGGCTAA CTACCAGATG GTGCAGTCGC TATATGATTC 
    TTCTTGGAGG AAAATGTGGA TGCTGAGACC AAGAATCCAA TTTGACGGTA 
    TAAGTTCAAG AAGAATTTTA TCATAACATA TGTTCAAACA TTAATTTGAT 
    GAATGTTAAA TTCATATGCG CCAACTAGGC TAATATCATA GCACACATCA 
    CATTCTTTAG ATTTGTGTGG AAAGAAATTG TCTAGATTTT AATCAAACTG 
    ATAAAATGTC TCATCATGAG CTGTTTTTCT CTCACTTGGC TGTTTAAAAT 
    TTTAATCAGG TATGTACTGT ACAATACTGG TACCTTGGTC AAATATTGTA 
    CAAAAGTATG TAAGCAAAGT AATGTGTCAT TCATTCTCAA ATTTTCATGT 
    GTCACTAGCC TAGAGCTCGT GCATTGCAAC AGAAAACAAA TTGAGTTTCT 
    AGCTTATTAA GTCAATTAAT AAGCACTTAT TTAGTCTAAG TAATACTATG 
    AATTTTCTTT TAAACAAATA GGTGATTTTG AAATTTGGGG GAGCCAATAG 
    TGAAATAGGG GATGACTTGT TGAAAGGTGG TGTAATAATA TAGATTGTGC 
    GGCCCAGATG TTAGTGGTAG GGGTGGTGTG GGAATGGACA CCACCACTAC 
    TAACATTTTA AGTAGTATAG ATACCGGCAT ACATGTAAAA CAACAAAATA 
    CTACTACTGT ACACATGCAT CATACTCTTG TGAATTGGCT GTGCAAAGAC 
    GGTGGTGGGA GGAGGTGCAT AGCAGCGTGG AGGCGGACAA ATCACAGCAT 
    GTGCTCAGGC TTGAACATTG TGCACTGAGC CCAGGAAGAA TCACAGGTTC 
    AGAGCAGAAG AGCTGCATTG ACATGTTGAT ACACTGTGCA CCAGTAAAAA 
    AAATCTAGGC CAGAGGAATT TTTTAAAATC ATTGCTGTCT CGCATAGCTT 
    CATGAGGTGT AGCTTTTTCA TAACACCAAG ATCTGGTTCC GATCTGTCTC 
    ATCTAACTGT TTGTGCCACC ATGTTTACTT GTGGCCAGAG GCTGCTCAAC 
    TCACTTGTCA ATTCCAAAAA TGCATGAACA ACAAGAAAAC ATTTTGTTGC 
    ACAGATCTTG GAGCACAACC AATGGCTGAT CGGAGTTCGT ATGTACCTAT 
    TTTGCTGCCT AAAAAATTCC AATTATTACT GGTCCAAATG AAATGGACAT 
    CAATTATTAT GGTGACAAGT GAATGATCAG TTGATTGTTT TTGGGAATGT 
    GTATGCCAGT TTATCTGTTC AATACACTGA ATTTCACGCA TAATTCTATG 
    TTTATTATCA CTATGGTACA CATTGATTTC GTGCATTCAC TTTGGGTTGC 
    ATGCTGAGAC ACCATGACAT TTTTAAAGTA CAGTAAGAAT AGTATGACCC 
    CGCAGTGAAT GCGCTTTTGA CTCATTAATG AATGTATGTC GAGGCATATC 
    AGGCTGTTAC ATTTTGACTG AATTTCAGCT GCAGACTAAT CCTGTTGCAT 
    ACTGCGATAA TAGTGTATTT GGATCAGTAG TTTGCTACTG AAGACTAGCT 
    GAAAGGCATT GCATTAGTTT TGGAACTTTT CTGTTGTTAT TGCTGTAATT 
    GCTAGAGTAC CCTGTATTGT GGCTATACTT TCTTTGGTTC TTTGAGCGAA 
    ATTTGATACT TGTTGCTTCT TCAGGTCTTT ATGTTAGTAG GAACACATAT 
    ATCCATACGG GGACTGCGGA GTGGCAGTTC ACAAAAACTG TCAATGTGGT 
    TTGCTACTAT CGTTACTTGA GATTTTTTCC AAGTGGAAAA TTCCTCTACA 
    AGATTTCCCC ACAGAAGATT AAGGATGTTG TCAAGTGCAT GCATTTCCGG 
    GCATCCAAAG GTGATTGTGT ATTTAAAGGC GACTACGTAT TGTCAGAGGA 
    TGGCCAGATA GAACTGGCAC TCCTGTATCC AGGGCGTCGC TACACACTAG 
    TTAGGATGCG CCTCAGGCTA GAGGCACAAC TCTGGGCGCA AACAACAGGT 
    TGGATGTATT GAAGATCTTA ACCACCGGGG TGAATGCAAC CGAACTGAGA 
    AACTGGAAAG GCAGCGTGCT TGAACTTGTG GAGACCTGGG ATGAGGATGA 
    GACGCATGAT CCAGAAGTTC CTGCTGTTAC CCACAGCAGG GGTTTGACCC 
    CATTTGTGTT TGTTCCATTT GAGGAGGCTG ATACTTCAGT GATGAATCTG 
    CCAGTGGAGA AGATGGACTA CTTTGTCCCT GGGTGATCTT GCGCACAAAT 
    AATAGTTTTT CCAAGATATA TGATGAAGAC GCAATTTCGC TGATGTTAGG 
    GCAATAATGT GCATACACCA TCAGACGTCA GTCTTTGTTC AATTTCATGC 
    TCATGTTGCT TGTATACTGT TGTATGAATA ATGCTATGTT TTGTTGGTGC 
    TTGAAAGCAA ACATTTTGTT GGACCATCCT CCCGCAGCAA TAATGGTCCA 
    ATACTTACTA GTACATGGTG TTGCCTTGTA AATAGATCAT GGTGCAACTG 
    ATGAAACAAT ACATTTGTGG TTC

    Gene models with high sequence identity

    1. AT1G21760.1 [+] show detail - F-box protein 7
      E-value: 1e-61; Score: 122.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 2.8e-17
    ProfileScan F-box domain, cyclin-like 11.697
    Gene3D no description 5.1e-06
    HMMPanther gb def: F8K7.20 protein (At1g21760) 4.5e-58
    HMMPanther FAMILY NOT NAMED 4.5e-58
    HMMPanther gb def: F8K7.20 protein (At1g21760) 1e-34
    HMMPanther FAMILY NOT NAMED 1e-34
    HMMPanther gb def: F8K7.20 protein (At1g21760) 4.6e-45
    HMMPanther FAMILY NOT NAMED 4.6e-45
    HMMSmart F-box domain, cyclin-like 2.9e-09
    HMMPfam F-box domain, cyclin-like 3.4e-11

    See the detailed result >

    AT1G21760.1

    Model type
    Protein coding
    Short Description
    F-box protein 7
    Curator Summary
    This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.
    Computational Description
    F-box protein 7 (FBP7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 471 Blast hits to 471 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 132; Plants - 70; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR