K18229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18229

Determination of introduced cDNA(s)

  • J013123G23 - Rice Full-length cDNAs - Original: J013123G23

    full reading [+] show sequence

    Nucleotide sequence: J013123G23 - full reading 
    GAATCTCATC ACCATCGAAT CATCAGCATA CACACGATGG CGTCCCAACG 
    CCGGCGATCA TCTGCCACCG CCGTCCTCCT CTCCTTGCTA CTGCTCCTCC 
    AGTTGGCCGC CGCCTATCCT CAAGGAAAGA GGCAGAACGT CGCCGTCTTC 
    TGGGGCCGCA ACAAGGCCGA GGGCTCGCTC CGGCAAACCT GCGACACCGG 
    CGACTACAAC ATCGTCATCA TCTCCTTCCT CAGCGTCTTC GGCCACGGCA 
    AATACTGGCT CGACCTCTCC GGCCACGACC TTCGCGACGA CACCATCGTC 
    AACGGCGTCG ACTTCTTCAT CGACAACGGC CCAGCCGACC ACTACGACGA 
    CCTCGCCAAC CGCATCAACG ACTACAACCA GAACATCCGC GACCCCATCG 
    GCATCATGCT CACGGCGACG GTGAGGTGCT CCTACCCTGA CCCGAGGATG 
    AAGGCGGCGC TGGACACCAA GCTGTTCCGG CGCATCCACG TTCGCTTCTA 
    CGACGACCCG AGCTGCTCCT ATAACCACGC CGGGCTCGCC GGCGTCATGG 
    CGCAGTGGAA CAAGTGGTCG GCGACGTACC CCGACGGGCA GATCTTCCTG 
    GGGGTCGTCG CGGCCAACTT GACGGGGAAG AACGACATGG TCGCCGTCGG 
    CGAGCTCCGC GACAAGCTGC TGCCGGCGGT GCAGAACACG GATACGTACG 
    GAGGAGTGAT GCTCTGGAAC AGCTACTACG ACTCGCTCAC TCACTACGGC 
    CGATACGTCA AGGACTTGGC TTGATATAAT TAATTAAACT CAAATCAACC 
    AATAATTACT TGAGCCCGTG CATGCATGCA TGCAGCTCAA TCACTATCTC 
    AGTAATTACG GCGTCATGTG TTTGATATAG GAAAGTAATC CCTACGTAGG 
    CCATTCTCAA CCCAATGACT AAGATGGTGT CTATAGCATT AAATAAGGTG 
    CCACCTAGAA TGAAAAATGA TGTGACAAGT AAATAAATGA GGAAAGAGAA 
    GGAAATCATG TCTTGCATGA GACATGGTTT CTACACAACA TCCAAGACAT 
    CATGTGAGAT AATGAGTATT AAATTTAAGT ATGGAATAGT AGTGTTTGCA 
    TTGGAAGAGT GGCGTCTAGT ACTAGTTTCT TGATGATGTG GAGTTTATGA 
    AAATCATGTT TTGGGTTGGG ATGTTGTTTT TCTTTTGACC TAGCTTGCTA 
    GCGAAAGCTA GTGTTAATTA CATTTTTAAT TTGTCATAAA TGCATGTGTG 
    ATCGATGTGT CCTTAATTAG TCTTTTTTTT TGCAATCTAT GGTAGTAGTT 
    ATTCCATG

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 6e-24; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 5.3e-46
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.1e-58

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR