K18241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18241

Determination of introduced cDNA(s)

  • J013000K23 - Rice Full-length cDNAs - Original: J013000K23

    full reading [+] show sequence

    Nucleotide sequence: J013000K23 - full reading 
    TATCTCCTCC TCCTCCTCCT CCTAAGCTCA AGCAAAGATT CATCCATCGA 
    TCCAACTGAT CCAATCCAAA CTCCAAAGGC AAAGCAAAGA AGGTCGCATT 
    CGATTCGATT CCAGCGATGG CGGCGGTGAT GGTGGCGAGG CAGGGGAGGG 
    AGCTGCAGAG GTACAGCGAC AACACGGGGG GGAGGATGGT GGTGGGGTGC 
    ATCCCGTACA GGGTGAGGGG CGACGGCGGC GGGGTGGAGG TGCTCGTGAT 
    CAGCTCGCAG AAGAAGGGCG CCGCCGCCGG CGACGTGGTG ATGTTCCCCA 
    AGGGCGGGTG GGAGCTGGAC GAGTCCGTGG ACGAGGCGGC GCGGCGGGAG 
    GCCCTGGAGG AGGCCGGGGT GCTCGGCGAG ATCGGCGCCT CGCTGGGGCG 
    GTGGTGCTAC CGGAGCCGCC GCTACGACGC CACCTACGAG GGCTTCGTCT 
    TCCCGCTCCG GGTCACCGAC GAGCTCGACC GGTGGCCGGA GATGGCGGCC 
    AGGCGCCGCA GCTGGGTCTC CCCGCAGCAG GCCATGGACC GGTGCCCGCA 
    CTGGTGGATG CGCGAGGCCC TCCAGCGATT CGCCGACCTC TTCCCCCAAC 
    ACACGCCGTT GTCCCTCTTG TAGGCGGCGG CGCCGGCGGC GAGTTCGCCG 
    GAGTTGAGAG CGATGTAATT AATTTGCAAC CTCACGGGTC ACAAGAGATT 
    CGGCCATGTA AATCTCACCC TTAGTTAACA CATAATTTTT TTTCGTGACA 
    AGCAGAGAAA TTCAGAATTC CATTCGGAGC C

    Gene models with high sequence identity

    1. AT1G73540.1 [+] show detail - nudix hydrolase homolog 21
      E-value: 6e-36; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NUDIX hydrolase domain 8.2e-18
    Gene3D NUDIX hydrolase domain 1.3e-15
    PatternScan NUDIX hydrolase, conserved site 0
    HMMPanther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROL 9.1e-14
    superfamily NUDIX hydrolase domain-like 4e-25

    See the detailed result >

    AT1G73540.1

    Model type
    Protein coding
    Short Description
    nudix hydrolase homolog 21
    Computational Description
    nudix hydrolase homolog 21 (NUDT21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 4 (TAIR:AT1G18300.1); Has 1276 Blast hits to 1275 proteins in 388 species: Archae - 3; Bacteria - 524; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR