K18243

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18243

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18243

Determination of introduced cDNA(s)

  • J023118D04 - Rice Full-length cDNAs - Original: J023118D04

    full reading [+] show sequence

    Nucleotide sequence: J023118D04 - full reading 
    GATTCAGCAA CCTGACCTCT CCCGTTCTCC TGCAGCTAGC CTCCGGCAAG 
    TCTCCAGCGC GTCGCCCTGG ACCGAAATAT TATGCCACGT TCTTCTCGTA 
    TGAATCTGTG GCCGCATTGC TTCCCGTGTT TCGACGATGG CGACAGATCA 
    GGCAACAGGT TCAGTACTGT ATGCAACTTC CCCGATGATC TCCTCCCGTC 
    GCTCGGTGCT ACCGCTCACC AGCCTCCCAA GCTCAGGAAA TACCTCGTCT 
    CGCCTTATGA CCCGCGTTAC AAGGTCTGGG AAACATTTCT GATCATCCTG 
    GTGGTGTACT CGGCGTGGAT CTGCCCGCTG GAGTTCGCAT TCCTGAGGTA 
    CCTGCCCAGC GCGCCTTTTG TCGTGGACGA TGTCGTCAAC GGGTTTTTCG 
    CCGTCGACAT CATGCTCACT TTCTTCGTCC CGTTCGTGGA CAAGAAGTCC 
    TACCTCCTCG TTAACGATCC GAAGAAAATA GCAGTCAGGT ACCTGTCGTC 
    TTGGTTCGTC TTCGATGTAT GCTCGACTGT TCCATTCCAC TCCATCAGCC 
    TGCTGTTCAA CGAGCACGGG CATGACCTTG GCTTCAAGTT TCTCAATGTT 
    CTCAGGCTCT GGCGGTTGCG TCGAGTCAGT TCGATGTTTG CGAGGCTTGA 
    GAAGGACATC CGGTTCAACT ACGCGGTGAT ACGCTGCACG AAGCTCATCT 
    CGGTCACCCT CTTCGCGATA CACTGCGCCG GGTGCATCAA CTACCTTATC 
    GCCGACAGGT ACCCGGACCC GAGGAGGACA TGGATCGGCG CCGTGATGCC 
    CAACTTCAGG GAGGACGGGC TGTGGATCCG GTACGTGACG GCCATGTACT 
    GGTCCATCAC GACGCTGACC ACCACGGGCT ACGGCGACCT GCACGCCGAG 
    AACGCCAGGG AGATGCTGTT CGGCATCTGC TACATGCTCT TCAACCTCTG 
    GCTCACCGCC TACCTCATCG GCAACATGAC CAACCTCGTC GTCCACAGCA 
    CCAGCCGCAC CCGAGACTTT AGGGATGTGG TTCAGGCCGC CTCAGAATTC 
    GCGGCGAGGA ACCAGCTGCC GCAGCAAATA GAGGAGCAGA TGCTGAACCA 
    CATATGCCTC CGGTACAAGA CCGATGGCCT CAAGCAGCAG GAGACGCTAG 
    ACGTCCTCCC GAAGGCGATG CGATCCAGCA TTTCTCACTA CCTCTTCTTC 
    CGGGTTGTTC AAGGAGCCTA CCTGTTCAAG GGAGTCTCCT CAAGGTTCAT 
    CCAGCAGTTG GTAACAGAGA TGCAAGCAGA GTACTTCGCC CCAAAGGAAG 
    ACATCATACT GCAGAATGAC AGCCCATCGG ACTTGTATCT TCTTGTATCC 
    GGAGCAGTAG ACATTCTGGT ATTCCTAGAT GGAACAGAAC AGGTTTACAG 
    GAGAGCAGCT GAGGGAGAAC TGCTAGGGGA GATAGGTGTA CTGTGCAACA 
    AGCCACAGTC GTTCACTTTC CGGACGACAG AACTATCTCA GATTCTGAGG 
    ATCAGTAGGA CCAAGCTGTT GGGTATCATC CAGGAGAACA GAGAAGACGG 
    CGACATCATC AGAAGCAACC TTCAGCAAGT GAACGTATAA GTGGGCTAGC 
    TTCGCTGGGC GTGCTCAACG CAAGACAGAT GCCTCTGTTG GAAAATAGCA 
    TTTAAGTTTT GAGCGGATAG CATCTAATAG TTTCTGTACA AAAAACTAAA 
    AATGGAGGAA AGATCATGCG GTGGAACTGG TGAAAACTGA AAAGATTATC 
    TGTACTAGAA CATCATGCAG TGTAACTGGT GAAAAAACGA TCTGTGTTCG 
    GACAGATCTT GGACGTTGAG ACAATATCAC CTGCCTGTCA AAGAAAACTA 
    CTACTACCTT TACCAATC

    Gene models with high sequence identity

    1. AT5G46240.1 [+] show detail - potassium channel in Arabidopsis thaliana 1
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PLANT VOLTAGE-GATED POTASSIUM CHANNEL 2.8e-295
    HMMPanther VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL 2.8e-295
    HMMPfam Ion transport 3.2e-23
    HMMPfam Cyclic nucleotide-binding 6.6e-13
    FPrintScan Potassium channel, voltage-dependent, EAG/ELK/ERG 5.8e-11
    FPrintScan Potassium channel, voltage-dependent, EAG/ELK/ERG 5.8e-11
    FPrintScan Potassium channel, voltage-dependent, EAG/ELK/ERG 5.8e-11
    FPrintScan Potassium channel, voltage-dependent, EAG/ELK/ERG 5.8e-11
    FPrintScan Potassium channel, voltage-dependent, EAG/ELK/ERG 5.8e-11
    Gene3D no description 1.2e-08
    Gene3D RmlC-like jelly roll fold 2e-21
    superfamily Cyclic nucleotide-binding-like 2.7e-43
    superfamily Voltage-gated potassium channels 2.2e-41
    HMMSmart Cyclic nucleotide-binding 1.4e-23
    ProfileScan Cyclic nucleotide-binding 20.865

    See the detailed result >

    AT5G46240.1

    Model type
    Protein coding
    Short Description
    potassium channel in Arabidopsis thaliana 1
    Curator Summary
    Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5
    Computational Description
    potassium channel in Arabidopsis thaliana 1 (KAT1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: potassium channel in Arabidopsis thaliana 2 (TAIR:AT4G18290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR