K18304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18304

Determination of introduced cDNA(s)

  • J013002L22 - Rice Full-length cDNAs - Original: J013002L22

    full reading [+] show sequence

    Nucleotide sequence: J013002L22 - full reading
    GGCTTTGGTT CCTTCTTCTT CCATTCCATT GTGTTGATGA GTTGAGTTGG 
    CTCATCTCAT CGTCGCCGTC CTTGAATTGC CGCCTCCCAT CCCACGAATT
    CCGCCCCTCC CACCCTCCTG AGATCTCTCT CTCTCCCCCA CCTCCGTATT
    TAGGTAGGCG GCGGGCGCAT CACGTTCTAT TGCCCCCTCC TGCCCGCCGC
    CGCCGCCGCA CAGCCGGCGA TCGAGCGGAA TTCCCATTCC TTTCCGCCCG
    GTTTCCGGCG CTGCCGCCCC CCTCTTACCA TCCCGGGGGG GCCCAGAGGC
    CAGGAGCTGT CGCCGGAGGA TTTCAATTTT TCGGAGCCAT TTGATGCTAA
    TGCCACACCA CCACTCCTGC TAAAGCTGCC CTCATTATGA ACTCGCTGGA
    CAATGAGTAG CAATTGCACA TTGCTGATTT CCATCTCCTG CGGTTACATT
    CGTACACGAC AGCATGGGAA AACTTGCAGC TGTTGTTCGC AGTGTACTTA
    GATTAACAAA TGAAAGCATG AGGATTGTTA TGGTAACAAT TATTGGAGTG
    CTCTTGGGCT TCTTCATTGG AATTTCATTC CCATCAGTCA GCATAACAAA
    GCTTCACTTT CCTTCTAGCT TTGTATCATA CATAGAAGAC AGAAACTCTG
    GGCTCACTAC ACAAGCTTTG CTTAATCACG CCTGGACTTC CGCCCGAAAT
    GCAAGGGAAA ACAGTTCTGA ACCAAGTTCA AACACTACTT TGAAGATTTA
    TGTCCCAACG AACCCCAAGG GTGCAGAGAG ACTAGCACCA GCTATTGTTG
    TGCCAGAAAC TGACTTCCAT TTGCGCAGGT TATGGGGAGA ACCAAGTGAG
    GACCTGCCCT TCAAACCAAA GTACCTTGTT ACTTTCACTG TTGGATATGC
    ACAGAAAGAA AATATCAACA GAGCAGTGAA GAAGTTCTCT GACAATTTTG
    CTATTCTGTT GTTCCATTAT GATGGTCGGG TGAGTGAGTG GGACGAGTTT
    GAGTGGTCGA AACGAGCCAT CCATATAAGT GCCAGGAAAC AAACTAAGTG
    GTGGTATGCC AAAAGATTCC TGCATCCTGA TATTGTGGCA GCTTATGAGT
    ACATATTCAT CTGGGATGAG GACCTTGGGG TGGAGCATTT CAATGCGGAG
    GAATACATCA AACTTGTCAA GAAATACCAT CTGGAGATCT CTCAACCTGG
    TTTAGAGCCT GATCGGGGAT TGACATGGCA GGTGACAAAA AGAAGAGGTG
    ACCGCGAGGT CCACAAGGTT ACAGAGGAGA GGCCGGGCTG GTGTTCTGAC
    CCTCATCTTC CGCCTTGTGC TGCCTTTGTT GAAATAATGG CTCCAGTCTT
    CTCTAGAGAT GCATGGAGAT GTGTATGGCA TATGATTCAG AATGACTTGG
    TTCATGGATG GGGCCTTGAT TTTGCTCTCA GGAAATGCGT GGAGCCTGCT
    CACGAAAAGA TTGGGGTTGT TGATTCACAG TGGATTGTTC ACCAAGTGGT
    TCCATCTCTC GGGAACCAGG GCAAGTCAGA GAATGGAAGA CCAGCATGGG
    AAGGGGTGAG GGCGCGGTGC AGGAAGGAAT GGGGGATGTT TCAGACGAGA
    ATGGCGGAGG CGGAGAAGGC GTACTACAAG ATGATGGGCA TCACCCCTCC
    GAACTCCACA CTGGTGTAGA TCTAAGCTAG GCTGATTCTT CATCTTCATC
    TTCACTCCCA TCTCTGCCTC TGTCTGAATG ACGAGGATTC TGATGTGTTT
    TACCTGCTGT ACAGACAGTT CTGATGAACT GATGAGTGTG TAGGTAGGTG
    GTCAGATAGA GTGTGGATTG GATGGTGATG ATTGTAGAGC ATACATTTAC
    ACATGAGGGA GGGAGGGCCA TCGATCATGA GGAGGGTGTT ATACATACCA
    TCTATAAAAT CGATTATTTT GTGTTTTTGT GGTGGT

    Gene models with high sequence identity

    1. AT1G67850.2 [+] show detail - Protein of unknown function (DUF707)
      E-value: 5e-159; Score: 558.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G67850.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF707)
    Computational Description
    Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR