K18308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18308

Determination of introduced cDNA(s)

J013157H03 - Rice Full-length cDNAs - Original: J013157H03

full reading [+] show sequence

GGTAAAAGAA AGAGGAGAAA TTCTCCCGTC GTCTCCTTCC TTGCGCCAAG 
AAAGACGAGC CGCGGCTCAA CAGCGGAGTG GAGGGGCGCC GATCTCCATC 
GCCGAGGAGA GCAGAGCAGG GGAGGGGAGG GGATCCTGGT TAGCGCTTTT 
GGCGTGTGAT TGATTTCTAA ACGAATTTTG GGCCGTGAAG GGAAGTTCAA 
TCATGGCAGG GTCTCTTGCC GCCTCAGCAT TCTTCCCAGG TCCAGGCTCA 
TCTCCTGCAG CATCAGCTAG AAGCTCCAAG AATGCTGCTG TTACCGGCGA 
ATTGCCGGAG AATTTGAGTG TCCGTGGCAT TGTCGCAAAG CCTAACCCAC 
CTCCTGCAGC CATGCAAGTA AAGGCACAGG CTCAAACCCT TCCCAAGGTT 
AATGGTACGA AGGTTAACCT CAAGACGGTG AAGCCTGACA TGGAGGAAAC 
GGTGCCTTAC AGTGCTCCAA AGACGTTCTA TAACCAACTG CCGGATTGGA 
GCATGCTTCT TGCGGCTATT ACAACCATCT TCCTTGCCGC AGAGAAGCAG 
TGGACACTGC TTGATTGGAA GCCAAAGAAA CCTGACATGC TTGTTGACAC 
ATTTGGCTTT GGTAGGATTA TCCAGGACGG TATGGTGTTT AGGCAGAACT 
TCATGATTCG GTCCTACGAG ATTGGTGCTG ATCGTACAGC TTCTATAGAG 
ACATTGATGA ATCATTTACA GGAAACAGCT CTTAACCATG TGAGGACTGC 
TGGTCTTCTT GGAGATGGTT TTGGGGCTAC ACCGGAGATG AGCAAACGGA 
ACTTGATATG GGTTGTCAGC AAAATCCAGC TTCTTGTTGA GCAATACCCC 
GCATGGGGAG ATACGGTTCA AGTTGACACA TGGGTTGCTG CTGCTGGCAA 
AAATGGCATG CGTCGAGACT GGCATGTTCG TGACTACAAC TCTGGCCGAA 
CAATCTTGAG AGCTACAAGT GTTTGGGTGA TGATGCACAA GAAAACTAGA 
AGACTTTCAA AAATGCCAGA TGAAGTTAGA GCTGAAATAG GCCCATATTT 
CAATGACCGT TCAGCTATAA CAGAGGAGCA GAGTGAAAAG TTAGCCAAGA 
CAGGAAATAA AGTTGGTGAT GATGCTACAG AGCAATTCAT AAGAAAGGGG 
CTCACTCCTA GATGGGGTGA CCTCGATGTC AATCAGCATG TGAACAATGT 
TAAATATATT GGGTGGATCC TTGAGAGTGC TCCAATTTCA GTACTGGAGA 
AGCATGAGCT TGCAAGCATG ACCCTGGATT ACAGGAAGGA GTGTGGTCGA 
GACAGCGTGC TGCAATCACT TACCACCGTG TCAGGGGAAT GCACCAGCAT 
TGGCGCCGAC AAGCAGGCTT CTGCCATCCA GTGCGACCAT CTTCTTCAGC 
TTGAGTCAGG AGCTGATATT GTGAAGGCAC ACACAGAGTG GCGACCAAAG 
CGATCGCACG CAGCAGCTGA GAACGCGTAA ACAAACAAAC CGACGAAAAT 
CTGTGGGAGG GAGAATATCA AACTTCCCTT GCCTCTGTTG CCCTGAAGCT 
TATCTTGAAG TGTGAGTTGT ATTCTGTAAA AAATTAGTAG TTTCCATAGT 
GTGAGGTTGG AGGGGAGGTG TTGGTGCTTG CCTACTGTAC CTGCTACATC 
TATTATTTCT TGATTCTTTG TTCGCTTTTT TTTTTCTTTT TTGTTTTTAA 
CCCCTGTGGA GATAAGACAG GTTTTGAAGT GTGGAAGAGG TTGTTTCAAT 
CGTCTAATTG ATTCAACTAT TCAGC

Gene models with high sequence identity

AT1G08510.1 [+] show detail - fatty acyl-ACP thioesterases B
E-value: 1e-133; Score: 473.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Acyl-ACP thioesterase	1.5e-100
HMMPfam	Acyl-ATP thioesterase, N-terminal domain	7.1e-53
Gene3D	no description	5.4e-07
superfamily	Thioesterase/thiol ester dehydrase-isomerase	4.2e-23
superfamily	Thioesterase/thiol ester dehydrase-isomerase	1.5e-11

See the detailed result >

AT1G08510.1

Model type: Protein coding
Short Description: fatty acyl-ACP thioesterases B
Curator Summary: Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.
Computational Description: fatty acyl-ACP thioesterases B (FATB); CONTAINS InterPro DOMAIN/s: Acyl-ACP-thioesterase, N-terminal domain (InterPro:IPR021113), Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1275 Blast hits to 1274 proteins in 533 species: Archae - 0; Bacteria - 944; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR