K18309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18309

Determination of introduced cDNA(s)

  • J013000H23 - Rice Full-length cDNAs - Original: J013000H23

    full reading [+] show sequence

    Nucleotide sequence: J013000H23 - full reading 
    GACCTGCTCT CGTCTCCATC ACCATCCCTT CTCTCTCCTC TCTCTCTCTC 
    CAGTCTCCAC CTCCGAGGAG AGGCCAATGG CGGACGCCGA CGCGAGGGCC 
    CCGCCCAAAT CGGACCCCGG CGCCACGCCG ATCGGTTCGA TCTCCCCTTC 
    CTCCGCCGCC CCCGCCGCCG GGGAGGACGA GGTGGAGGTC GAGGTGGAGG 
    TGGAGGAGCA GCTCGCCGGA CTCGCCATCG CCGATCAGGG GGAGGAGCTG 
    CTGCTTCCCA AGCCCACCGG CTGGGAGGAT GGCCCTGTTG TTGTTGCTGG 
    AGATGAGGTC TCCGGTGGTG AGAAGCTGCC GGGTGAGGTG GCGGCGGCGG 
    TGGGGGTGGA GGGTGCTGCG GCGGATTCGA GGCCGCGGTT CCCGAGGCGA 
    CCCGGGGAGC CGGACTGCAC CTACTACGTC AAGTTCGGGA GCTGCCGCTT 
    TGGGATGAAG TGCAAGTTCA ATCATCCGGC GAGGAAGAAG AAGAGTAGGG 
    TGAAAGGTAG TAACGGTGGT AGTGGCAGCG GCGGGAGCAA CAGCAGCAGT 
    AACAAAGCCT CCTCGCCTGA TGATGAGCAG GCTCCAAAAG AGGAATACGG 
    AAGCTATGTT CCAGATATTT CACCTGAAGT TGATTCTTTG GGATTTGCTG 
    ACAAGGGGAG TGCGTCTAAC TTAGAAAACT TTAAGAAATA TTCTTATGAG 
    ATTATCGATG TGAAGAAGGG AAGAGTGGAG CCAAAGGAAC TTAAGGTTGC 
    CAAAGAGAAA AGGAAGGAAT TTATTTCAGA AGGTAGTTCC CAGGAGGAAT 
    GCAAGTATTA TTCAACACCT GGAGGATGCA AATTTGGTAA AGCTTGTAAA 
    TACCTCCACC GTGATGGAAA AGAAGGGAAA ACAGACGCTG AAAAGGTTGA 
    CCTGAACTTT CTCGGTCTTC CACTTCGTCC AGGGGAAAAG GAGTGTCCCT 
    ACTACATGCG TACTGGGAGC TGCAAGTACG CCACTAACTG CAAGTTTCAC 
    CATCCTGATC CTTCTAATGT TGCTTCTAAA GATCCACAGT TGGAGCATGA 
    GAATGGGGAT GCTCCACAGC AAGATGTTCA AGGATCATCG TCTCAGCCAA 
    ATGCTTCAAT TTGGCCCGAT CAGAGAACAG TGAATGAGCA TCATGTTCCG 
    TTTATAGCTC CATCTCCATC GTACAGTGCA GGGATGCTTC CTCCTCAAGG 
    AATGTATCCA CCTCCTGAAT GGAATGGGTA TCATCAGGTT CCGTTGAATC 
    CATATTATCC TCCTGGAGTC CCTTTCCAAC ATTTTCCAGC TGCTCCTATA 
    AATCATCCTA TGTACAAGGC ACCAGAAATA CCTGGACATC AGCAGGTTCC 
    TTCCGAGGAA TACCCAGAGA GACCTGGCCA ACCTGAATGT CAGCATTTTG 
    TGAAGAGTGG TTTTTGCAAA TTTAGGATGA AGTGCAAATA TCACCACCCA 
    AGGTCACCGG TGCCTCCAGC AGGAGCTCTT AGCCCTCTTG GCTTGCCTAT 
    AAAACCTGAT CAGCCTGTGT GCACATACTA TGGTCGCTAT GGGGTCTGCA 
    AATTTGGGCC AGCTTGCGCA TACAATCACC CCTTCAATTT TAGCCCTGTA 
    CCTGCAGCGG GACCTCCTCT CCTCCCTGCT CAATACCCAA CTCCAGGAAA 
    CTACACTCTC TGAAGCAGGC ACGAGCGATT TTTCATCGTC GCCGTGATGC 
    TTGTAATAAC TTCACTTGTA AGATAGCGTA GCTGAAAGCT GTACGTGGGT 
    TCACTCACTG ACAGTGGGAG AGATCTGGCT TGGAAAGTGG CAACGAAGTT 
    GCATCAAGCT GGGTACATTG CCGCTGGAAT TCATGAAATT AAACAAAACC 
    TGTCAAAACT CTTTACATTG TACAGCATCG TCGCGTTTAG TATACAACTA 
    TGGCGTCGGG CTGAATCCC

    Gene models with high sequence identity

    1. AT5G63260.1 [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
      E-value: 1e-56; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, CCCH-type 0.0013
    HMMSmart Zinc finger, CCCH-type 0.00053
    HMMSmart Zinc finger, CCCH-type 1e-05
    HMMSmart Zinc finger, CCCH-type 0.028
    HMMSmart Zinc finger, CCCH-type 0.0081
    HMMPfam Zinc finger, CCCH-type 2.6e-06
    HMMPfam Zinc finger, CCCH-type 5.2e-06
    HMMPfam Zinc finger, CCCH-type 5.2e-09
    HMMPfam Zinc finger, CCCH-type 3.2e-05
    superfamily CCCH zinc finger 1.2e-05
    superfamily CCCH zinc finger 5.2e-05
    superfamily CCCH zinc finger 0.00014
    superfamily CCCH zinc finger 0.00017
    superfamily CCCH zinc finger 0.0003
    HMMPanther PROLINE RICH POLYPEPTIDE 3 0.00037
    HMMPanther PROTEIN PHOSPHATASE RELATED 0.00037
    ProfileScan Zinc finger, CCCH-type 14.258
    ProfileScan Zinc finger, CCCH-type 13.103
    ProfileScan Zinc finger, CCCH-type 14.793
    ProfileScan Zinc finger, CCCH-type 13.676
    ProfileScan Zinc finger, CCCH-type 13.732

    See the detailed result >

    AT5G63260.1

    Model type
    Protein coding
    Short Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Computational Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G48440.1); Has 2144 Blast hits to 1341 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 351; Plants - 1021; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR